Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq59 188 9e-43 seq2201 125 9e-24 >seq59 Length=545433 Score = 188 bits (208), Expect = 9e-43 Identities = 400/590 (68%), Gaps = 19/590 (3%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 |||||| |||||||| ||||| ||||| |||||||| || ||||||||||| || || Sbjct 337960 CAAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 337901 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 | ||| ||||| || ||||| ||||| | ||| ||||| | | || || |||||| | Sbjct 337900 CAATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCG-CACAGAAACTTCCAGAGA 337842 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 36329 | || || ||||| || |||||||| | | ||||| | || | |||| || Sbjct 337841 AAAATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGT 337782 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | ||||| |||||||| |||||||||||||||||||| || ||||| | | Sbjct 337781 CG---ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGG 337725 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA----AAGA 36445 | | ||| ||| |||| || |||||| | |||| || || | |||| Sbjct 337724 CGTGAAATAGACGAGTTTTCTCTGCGGAATCTTTGA----TGTAACACTCCAGGAGAAGA 337669 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || ||||| || ||||||||||| ||||| || || |||||||||||||| | || Sbjct 337668 CTGTACATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCT 337609 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | | ||| || ||| | ||||| | || | ||| ||| || || || || Sbjct 337608 TCTGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCG 337549 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTAGTT 36623 || ||||| || || | || || | || |||| |||| |||||| ||| Sbjct 337548 GACGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTA 337489 Query 36624 TATT-CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 | || ||||| | |||||| ||| | ||| || || || | ||||| || || ||| Sbjct 337488 TGTTCCCAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCC 337429 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || || || ||||| | ||| || || |||| | || ||||| || Sbjct 337428 TCGGCTTTCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 141 bits (156), Expect = 1e-28 Identities = 391/593 (66%), Gaps = 25/593 (4%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 |||||| ||||| |||||||| || || |||||||| || ||||||||||| || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 ||||| ||||| || || || || || ||||| ||||| | | || || |||||| | Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCG-CACAGAAGCTTCCAGAGA 359263 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCACTGT 36329 | || || ||||| || ||||| || | || ||||| || || | |||| Sbjct 359264 AAAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCAC--- 359320 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 ||| ||||| |||||||| ||||| || || || || || || ||||| | | Sbjct 359321 CATCGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGG 359380 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC----AAAAGA 36445 | | |||||| |||| || | | ||||| ||||| || || | |||| Sbjct 359381 CGTGGAAGAGACGAGTTTTCTCTGTGTTGTCTTT----GATGTAACACTCCAATAGAAGA 359436 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || ||||| || ||||| ||||| || || || || |||||||| ||||| | ||| Sbjct 359437 CTGTACATCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCC 359496 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | | ||| || ||| | ||||| | || | ||| || || || ||||| Sbjct 359497 TCCGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCG 359556 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTAGTT 36623 || ||||| || || | || || | || || | |||| | ||| || Sbjct 359557 GATGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTG 359616 Query 36624 TATTCCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 | |||| || ||| |||| | || | ||| || ||||| | |||||||| || Sbjct 359617 TGTTCC---CAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGAC 359673 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || || || |||||||| | ||| | || |||| | |||||||| || Sbjct 359674 GCTTCAGCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 125 bits (138), Expect = 9e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 |||| |||||| || || | || | || |||| ||| | ||||| |||||||||| Sbjct 456667 TTTGCCTCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAAC 456608 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||| ||||| || || ||||||||||| |||||| || ||| | |||||||||||| Sbjct 456607 AATGCCATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATG 456548 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 | || | ||||||||||||||| ||| ||||| || || ||| | || || Sbjct 456547 CACAGAAACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTC 456488 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||| || ||||| ||||| ||||| ||||| | || ||||| ||| Sbjct 456487 ATATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154469887520