Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq486 107 2e-18 seq1915 87.8 2e-12 seq1253 84.2 2e-11 >seq486 Length=444201 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||||||| ||||| ||||| |||||||| ||||| Sbjct 169124 CCTCCACGGAGACGTAGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCA 169183 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| ||||| || |||||| |||||| | ||||||||| || || Sbjct 169184 AGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGG 169243 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| ||| |||| | || | || || | | ||| ||| Sbjct 169244 ATTCCCTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACC 169303 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || ||||| || || || ||||||||||| Sbjct 169304 TCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAACAAATATTTGCAT 169350 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||||||||| || ||| || ||| | ||||| | ||| || || Sbjct 170522 GTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCTTCTAACTGCTTGCCT 170581 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| |||||||| || || || || ||||||||||| ||| |||| ||||| Sbjct 170582 GCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTC-CTGAATTTTAGTTTT 170640 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||| || | | || ||||| | || | ||||| || || | || Sbjct 170641 AACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCCGTTAGTGT 170700 Query 139747 TTTTACGAATATTTGCAT 139764 |||||| || |||||||| Sbjct 170701 TTTTACAAAGATTTGCAT 170718 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||||||||| || || ||| || |||| ||||| | |||||| ||| Sbjct 169610 GTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGTTTGCCA 169669 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| |||||||| || || || |||||||| || || |||||| || Sbjct 169670 GCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTCGCCTTA 169729 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||| ||||| | || | || || ||||| | || Sbjct 169730 ACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTGAGTGTC 169789 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 169790 TTGACGAAAATCTGCATA 169807 >seq1915 Length=652484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTC-ATTGTGCTCGAGTCTTCGAGCTGTTTAC 139625 || || ||||| |||||||| ||||| || | || | || || || || ||||||| Sbjct 300047 GTCGATTCTTTCTGAATGTTGTAATCAGCAAGAATGCGATCA--TCCTCAAGTTGTTTAC 300104 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 | ||| |||| || | ||| || || ||||| || ||||||||||| || || | Sbjct 300105 CTGCAAAGATGAGTCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTAGAATCTTACTCT 300164 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | | || || || | | ||||| || | |||| |||||||| ||||||| Sbjct 300165 TTATATTCGCAACGGTATCTGAAGTTTCCACTTCTAATGTCATTGTCTTGCCCGTCAACG 300224 Query 139746 TTTTTACGAATATTTGCAT 139764 | |||||||| |||||||| Sbjct 300225 TCTTTACGAAAATTTGCAT 300243 >seq1253 Length=111296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || |||||||| |||||||| ||||| || || | | ||||| | ||| Sbjct 79437 GTGAAGAGTGGACTCTTTCTGAATGTTGTAATCTGCCAGAGTTCGCCCATCTTCTAACTG 79378 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||| ||||||| | || ||||| || ||||| ||||||||||| Sbjct 79377 TTTTCCAGCAAAGATCAGTCTCTGTTGATCAGGGGGTATCCCTTCTTTGTC 79327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496050184617600