Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq59 206 4e-48 seq2201 125 1e-23 >seq59 Length=545433 Score = 206 bits (228), Expect = 4e-48 Identities = 585/884 (66%), Gaps = 31/884 (4%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| |||||||| || || ||||| ||||| ||||| ||||| || | ||| || || Sbjct 338248 TTTCTGGTATTCTCCGACCCGTTTCTCGAAGAAATTTGTTTTCCCCTGCAAAGAAATCAA 338189 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||| ||||| | ||| || | ||| | | |||| | | Sbjct 338188 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTTCCATACCCCAGAGCTCCGAG 338129 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 49845 || | ||||||||| ||||| || ||| |||||| ||| |||||||| | | Sbjct 338128 TAACCGATCCGCGACGAATTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAA 338069 Query 49846 AGTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 49903 || || |||||||| ||||| | |||||| || ||| || || || | || Sbjct 338068 AGCGCAA--GGAAGAGCATCGCAG--ACGAATTCTCTCTCGATGTCAACGGCGTCCGATA 338013 Query 49904 TAATAGATCTAACGGTT----TCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCA 49957 |||| |||| | || || ||| | | | | || |||| || Sbjct 338012 C----GATCCCACGGATCTTCTCCTCGCTCAGCTTCGTGTTCAGAAGACCGTAAAG--CA 337959 Query 49958 AACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGA 50017 |||| |||||||| ||||| ||||| |||||||| || | ||||||||| || || | Sbjct 337958 AACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCA 337899 Query 50018 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAG 50076 ||| ||||| || ||||| ||||| | ||| ||||| | | || || ||||| || Sbjct 337898 ATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCG-CACAGAAACTTCCAGAGAAA 337840 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTG-GCGCTGTCA 50133 || || ||||| || |||||||| || | ||||| | || || || | ||| Sbjct 337839 AATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCG 337780 Query 50134 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 ||||| |||||||| |||||||||||||||||||| || || || | ||| Sbjct 337779 ---ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCG 337723 Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 | ||| ||| |||| || |||||| | ||| || | | |||||| ||| Sbjct 337722 TGAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTAC 337663 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || || ||||||||||| ||||| || ||||||||||||||||| | || || | Sbjct 337662 ATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAG 337603 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||| || ||| | ||||| | || | ||| ||| || || || || || Sbjct 337602 ACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCC 337543 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG--GGTGTTAGTTTATT-C 50430 ||||| || || | || || | || ||||| |||||| |||| ||| | || | Sbjct 337542 GCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCC 337483 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||| | |||||| ||| | |||||| || || | ||||| || || ||||| || Sbjct 337482 CAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCT 337423 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || || ||||| | ||| || || |||| | ||| || || || Sbjct 337422 TTCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 150 bits (166), Expect = 3e-31 Identities = 390/588 (66%), Gaps = 15/588 (3%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 |||||| ||||| |||||||| || || |||||||| || | ||||||||| || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAA 50074 ||||| ||||| || || || || || ||||| ||||| | | || | | ||||| | Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCG-CACAGAAGCTTCCAGAGA 359263 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT--C 50132 | || || ||||| || ||||| || |||| ||||| || || | | | | | Sbjct 359264 AAAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAA--GACTCCGCACC 359321 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || ||||| |||||||| ||||| || || || || || || || || | ||| Sbjct 359322 ATCGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGC 359381 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | |||||| |||| || | | ||||| | ||| || | | |||||| || Sbjct 359382 GTGGAAGAGACGAGTTTTCTCTGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGTA 359441 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || ||||| ||||| || || || ||||||||||| ||||| | ||||| | Sbjct 359442 CATCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCGA 359501 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || ||| | ||||| | || | ||| || || || ||||| || Sbjct 359502 GACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATGC 359561 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG--GGTGTTAGTTTATTC 50430 ||||| || || | || || | || || || |||||| ||| || | ||| Sbjct 359562 CGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTGTGTTC 359621 Query 50431 CAATCATTGA----TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 | || ||| |||| | || | ||| || ||||| | |||||||| || || || Sbjct 359622 C---CAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTC 359678 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || || |||||||| | ||| | || |||| | |||||| || || Sbjct 359679 AGCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 125 bits (138), Expect = 1e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || |||| |||||| || || | || | || |||| ||| | ||||| |||||||| Sbjct 456670 TCTTTTGCCTCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGG 456611 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 || ||| ||||| || || ||||||||||| |||||| || ||| ||||||||||||| Sbjct 456610 AACAATGCCATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATT 456551 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 | | || | ||||||||||||||| ||| ||||| || || ||| | || Sbjct 456550 ATGCACAGAAACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGT 456491 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| || ||||| || || ||||| ||||| | || ||||| ||| Sbjct 456490 GTCATATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 79078 AATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAA 79137 || || || || |||||||||| ||||| || || | |||| || || || | | Sbjct 458486 AAAACCCTTCGGCTGTAAATATTTGATGTATAAGGCTCAAAACATTCGTTGTTACCAAGA 458427 Query 79138 ATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 79197 ||||| ||||| || |||||||||||||| || | | | ||||| || ||| || Sbjct 458426 ATTTGGCTGGTTGAAGCTGTTGGCATAGGTGCTACAAGAAGAGAATTTCGAACACC--AT 458369 Query 79198 GATCTGA--TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCC 79255 | | || | || || ||| | |||||||||| ||||||| ||||||||||||| Sbjct 458368 GTTTGGAAATATTCGCTCTTAATGCAGTCCAATCCCAACGATCAGAAGGGACAACATTCC 458309 Query 79256 AAAGATCATATTGTAGAA 79273 | | ||||| ||| |||| Sbjct 458308 ACATATCATGTTGAAGAA 458291 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 |||| |||| ||| |||||| || || ||||| |||||| ||| ||| ||| || Sbjct 457241 TTTCATATTTTGTGTATAATTTCTCAAATTCGTCACCCCAACAATCTGCTAGTCCTGGTG 457182 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 ||| | || || | || ||||| | |||| | || |||| || ||||||||||| Sbjct 457181 CTTCATTTGGGCAAAACAGTGACCATTGCCCATTACTCTGGACTCTTTGCATAAAGAGAT 457122 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||| | ||| |||| ||||| |||||||| ||| | ||| || Sbjct 457121 CAGGCACCCAGAGAGAATAAAATAAATCTCTGGCTCTGTTCTCTTC 457076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248796213920