Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq486 93.3 3e-14 >seq486 Length=444201 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| | | |||||| | || ||||| || || |||||||| Sbjct 158487 TCCTTTTGGATGTTGTAATCTGCAAGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAG 158428 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | ||| || || | || | || || || || |||| |||| || | Sbjct 158427 ATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCTTTCACATTA 158368 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| |||||| || ||| || |||| || || || || ||||| |||||||||||| Sbjct 158367 TCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACA 158308 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 158307 AAGATCTGCAT 158297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||| |||| ||| ||||| | || |||||||| ||||| || || Sbjct 170300 TCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCCTGCGAAG 170359 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCA-ACTCTTTGACTC 43036 ||||| ||||| || || | || | |||||| || || ||| ||| | ||||| || Sbjct 170360 ATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTC-CTGTATCTTAGTCTTT-ACAT 170417 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || | | ||||| | ||| || |||| || || ||||| ||||| || || || | Sbjct 170418 TGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGTCTTGA 170477 Query 43097 CAAAAATTTGCAT 43109 | ||||||||||| Sbjct 170478 CGAAAATTTGCAT 170490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| ||||| | |||||| |||| ||| || || | || ||||| |||||||| ||||| Sbjct 169615 CTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGTTTGCCAGCAAA 169674 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| || || || || | || | ||||| || || ||| | | || || | Sbjct 169675 GATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTCGCCTTAACATT 169734 Query 43038 GCCAACTGTGTC-GCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | ||||| | || | || || |||| || || ||||||||||| || || || | Sbjct 169735 GTCGATGGTGTCAGACAAC-TCAACCTCTAAAGTGATGGTTTTTCCGGTGAGTGTCTTGA 169793 Query 43097 CAAAAATTTGCAT 43109 | ||||| ||||| Sbjct 169794 CGAAAATCTGCAT 169806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381359244385224