Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq59 176 6e-39 seq2201 120 4e-22 >seq59 Length=545433 Score = 176 bits (194), Expect = 6e-39 Identities = 389/576 (68%), Gaps = 12/576 (2%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 |||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || Sbjct 337960 CAAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 337901 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 | ||| ||||| || ||||| ||||| | ||| ||||| | | || || |||||| | Sbjct 337900 CAATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCG-CACAGAAACTTCCAGAGA 337842 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 42236 | || || ||||| || |||||||| | | ||||| | || | |||| || Sbjct 337841 AAAATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGT 337782 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 | ||||| |||||||| |||||||||||||||||||| || || || | || Sbjct 337781 CG---ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGG 337725 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | | ||| ||| |||| || |||||| | || || | | |||||| | Sbjct 337724 CGTGAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGT 337665 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| || ||||||||||| ||||| || ||||||||||||||||| | || || | Sbjct 337664 ACATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTG 337605 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 ||||| || ||| | ||||| | || | ||| || || || || || | Sbjct 337604 AGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACG 337545 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTGTTAATTTATT 42534 | ||||| || || | || || | || |||| |||| |||| | | | || Sbjct 337544 CCGCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTT 337485 Query 42535 -CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||||| | |||||| ||| | |||||| || || ||||||| || || || || | Sbjct 337484 CCCAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGG 337425 Query 42594 CCTTTTTATACATATTCCAGATATCATGAT-ATTGA 42628 | || || ||||| | ||| || || ||| ||||| Sbjct 337424 CTTTCTTGTACATTTCCCATATCTCCGGATAATTGA 337389 Score = 154 bits (170), Expect = 2e-32 Identities = 391/589 (66%), Gaps = 17/589 (3%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 |||||| ||||| |||||||| || || || ||||| || ||||||||||| || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 ||||| ||||| || || || || || ||||| ||||| | | || || |||||| | Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCG-CACAGAAGCTTCCAGAGA 359263 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCACTGT 42236 | || || ||||| || ||||| || | || ||||| || || | |||| Sbjct 359264 AAAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCAC--- 359320 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 ||| ||||| |||||||| ||||| || || || || || || || || | || Sbjct 359321 CATCGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGG 359380 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | | |||||| |||| || | | ||||| | || || | | |||||| | Sbjct 359381 CGTGGAAGAGACGAGTTTTCTCTGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGT 359440 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| |||||||| ||||| || || || ||||||||||| ||||| | ||||| | Sbjct 359441 ACATCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCG 359500 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 ||||| || ||| | ||||| | || | ||| ||| || || ||||| | Sbjct 359501 AGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATG 359560 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTGTTAATTTATT 42534 | ||||| || || | || || | || || | |||| |||| | | || Sbjct 359561 CCGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTGTGTT 359620 Query 42535 CCAATCATTGA----TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 || || ||| |||| | || | ||| || ||||| |||||||||| || |||| Sbjct 359621 CC---CAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTT 359677 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | || || |||||||| | ||| | || |||| | ||||| || || Sbjct 359678 CAGCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230 |||| |||||| || || | || | || |||| ||| | ||||| |||||||||| Sbjct 456667 TTTGCCTCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAAC 456608 Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCT 72290 ||| ||||| || | ||||||||||| |||||| || ||| ||||||||||||| Sbjct 456607 AATGCCATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATG 456548 Query 72291 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350 | || | ||||||||||||||| ||| ||||| || || ||| | || || Sbjct 456547 CACAGAAACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTC 456488 Query 72351 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||| || ||||| ||||| ||||| ||||| | || ||||| ||| Sbjct 456487 ATATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 |||| |||| ||| |||||| || || ||||| |||||| || ||| ||| || Sbjct 457241 TTTCATATTTTGTGTATAATTTCTCAAATTCGTCACCCCAACAATCTGCTAGTCCTGGTG 457182 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 |||||| || || | || |||||| | |||| | | |||| || ||||||||||| Sbjct 457181 CTTCATTTGGGCAAAACAGTGACCATTGCCCATTACTCTGGACTCTTTGCATAAAGAGAT 457122 Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||| | ||| |||| ||||| |||||||| ||| | ||| || Sbjct 457121 CAGGCACCCAGAGAGAATAAAATAAATCTCTGGCTCTGTTCTCTTC 457076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120508773280