Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1915 113 5e-20 seq486 95.1 1e-14 >seq1915 Length=652484 Score = 113 bits (124), Expect = 5e-20 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || || | || | ||| | || |||||||| || ||||||||||| Sbjct 299789 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAA 299848 Query 143018 AT--TGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || || || || ||||| ||||| ||| |||| || | |||||| || || | Sbjct 299849 AGAATATGATCA--TCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGG 299906 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTC-CACCG-TGTCCGTGGGTTC 143133 | |||||||||||||| |||||| |||| | ||| || || | || | | ||| Sbjct 299907 GGATGCCTTCTTTGTCTTGAATTTTACTCTTTA--TATTCGCAACGATATCTGAAGTTTC 299964 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| | ||| | |||||||| |||||||| |||||||| |||||||| Sbjct 299965 TACTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || || | || | ||| || || |||||||| || ||||||||||| Sbjct 300473 CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGCA 300532 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || ||||| ||||| ||| ||||||| | ||| || || ||||| Sbjct 300533 AGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAGGG 300592 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| || |||| | | || || || | | || |||| Sbjct 300593 ATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTTACT 300652 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||| | |||||||| ||||||||||||||||| Sbjct 300653 TCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || || | || | ||| | || |||||||| || || |||||||| Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 143018 AT--TGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || || || || ||||| ||||| ||| |||| || | |||||| || || | Sbjct 299621 AGAATATGATCA--TCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGG 299678 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| |||||| |||| | | ||||| || | | ||||| Sbjct 299679 GGATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTA 299738 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | ||| | |||||||| ||||| || |||||||| |||||||| Sbjct 299739 CTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 ||||||| || || | || | ||| | || |||||||| || ||||||||||| || Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 143017 C-ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || | || || || ||||||||||| ||| |||| || | ||| || || |||| Sbjct 300077 AGAATGCGATCA--TCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAG 300134 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| ||| || |||| | | || || || | | ||| | Sbjct 300135 GGATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCA 300194 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | |||| |||||||| ||||| || |||||||| |||||||| Sbjct 300195 CTTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || ||||||||||| | ||| || || ||||||||||| Sbjct 300275 GTCGATTCTTTCTGAATGTTGTAATCAGCAAGAATGCAATCATCCTCAAGTTGTTTACCT 300334 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||| || || ||||| || ||||||||||| ||| || ||| Sbjct 300335 GCAAAGATGAGTCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGAATCTTACTCTTT 300394 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | | || || || | | ||||||||| | ||| | || ||||| |||||||| Sbjct 300395 ATATTCGCAACGGTATCTGAAGTTTCTACTTCCAAAGTAATTGTTTTGCCCGTCAATGTC 300454 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| |||||||| Sbjct 300455 TTTACGAAAATTTGCAT 300471 >seq486 Length=444201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||||| |||| ||||||||||| || ||||||||||| Sbjct 169124 CCTCCACGGAGACGTAGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCA 169183 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || || || |||||| |||||| | ||||||||| || || Sbjct 169184 AGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGG 169243 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || ||| |||| | || | || || | | || || Sbjct 169244 ATTCCCTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACC 169303 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || ||||| || || || ||||||||||| Sbjct 169304 TCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAACAAATATTTGCAT 169350 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || |||||||| |||||||| ||| || ||| | ||||| | || || || Sbjct 170522 GTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCTTCTAACTGCTTGCCT 170581 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||| |||||||| || || || || ||||||||||| | | |||| ||||| Sbjct 170582 GCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTC-CTGAATTTTAGTTTT 170640 Query 143108 AGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | | || | || || | | |||||| || | || | ||||| || || | ||| Sbjct 170641 AACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCCGTTAGTGT 170700 Query 143167 TTTTACGAATATTTGCAT 143184 |||||| || |||||||| Sbjct 170701 TTTTACAAAGATTTGCAT 170718 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||||| | ||| | ||||| ||| ||||| ||||| ||||||||||| Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || | || || |||||| |||||| | ||||| |||||||| Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||| || || | | || | ||||||| | || || Sbjct 158859 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACC 158800 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || |||| || |||||||| || ||||| Sbjct 158799 TCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507000279648960