Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq59 152 8e-32 >seq59 Length=545433 Score = 152 bits (168), Expect = 8e-32 Identities = 390/583 (67%), Gaps = 13/583 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| |||| |||| || || |||||||||||||| || || |||| || || | Sbjct 337380 TGTTTCCGATCAATTATCCGGAGATATGGGAAATGTACAAGAAAGCCGAGGCGTCTTTCT 337439 Query 125056 GGACGGTCGAAGAGGTCGATCTGTC-CAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| ||| ||||| |||||||| |||| || | ||||||| | | | || Sbjct 337440 GGACGGCCGAGGAGGTAGATCTGTCTCAAGATACTCGTC-ATTGGGAACATACTCTCACC 337498 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | | ||||| | || || | ||| || | || |||||||| | |||||||| ||| Sbjct 337499 AACAACGAGCGCCATTTCATTACTCACGTTCTCGCTTTCTTTGCGGCGTCCGATGGTATC 337558 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGT 125232 ||| || |||||| |||||| ||||| | ||| | |||| | ||| Sbjct 337559 GTCCTTGAGAATCTGGCCGTTCGATTCATGAAAGAG--GTCCAGGTCTCAGAAG-CACGT 337615 Query 125233 GC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || |||||||| || ||| ||||||||| | || || || |||||| | || Sbjct 337616 GCGTTCTACGGATTTCAGATCGCTATTGAGAACATTCATTCCGAGATGTACAGTCTTCTC 337675 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | || ||||| || |||||| | |||| | | || ||| |||| | || || Sbjct 337676 CTGGAGTGTTACATCAAAGATTCCGCAGAGAAAACTCGT-CTATTTCACGCCGTGGAGAC 337734 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | || | | || || ||||| | |||| ||| || |||||||| | | |||| Sbjct 337735 TATTCCTTGTGTAAAAAAGAAGGCGGATTGGGCGATGCGATGGATCGACGGTGCGGAGTC 337794 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | | ||| || || | ||||| || || ||| || || || || || || || || Sbjct 337795 T---TTCGCTGAGAGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAG 337851 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||| || || || ||| | || || || || || ||||| ||| |||| | || Sbjct 337852 TTTCTGTGCGATATTCTGGTTAAAAAAACGTGGTCTGATGCCTGGATTGACCTTCTCCAA 337911 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||| || ||||| ||||||| || || |||||||| || ||| Sbjct 337912 CGAATTGATATCGAGAGACGAAGGTCTCCACTGTGATTTCGCC 337954 Score = 143 bits (158), Expect = 4e-29 Identities = 393/588 (67%), Gaps = 23/588 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| |||| ||||| || | ||||| ||||| || || ||| | || ||||||| Sbjct 359725 TGTTTCCAATCAAGTATCCAGAGTTATGGGAGATGTATAAGAAAGCTGAAGCGTCCTTTT 359666 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG----ATTGGG-AGACTCGTTT 125110 |||||| ||||||||| ||||||||| | || |||| | |||| | || | || Sbjct 359665 GGACGGCCGAAGAGGTTGATCTGTCCCATGA----TACGCGTCACTGGGAACACACCCTT 359610 Query 125111 GACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || || | ||||| | || || | ||| || | || |||||||| | ||||| || Sbjct 359609 -ACCGACAACGAGCGTCACTTCATTACTCACGTTCTCGCTTTCTTTGCGGCATCCGACGG 359551 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTG 125228 ||||| ||| |||||| |||||| ||||| | ||| | | |||| Sbjct 359550 CATCGTTCTCGAGAATCTGGCCGTTCGATTCATGAAAGAG--GTCCAGGTCTCGGAGG-C 359494 Query 125229 TCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || || || ||||| || ||| || |||||| | || || || |||||| | Sbjct 359493 ACGCGCGTTCTATGGATTTCAGATCGCTATCGAGAACATCCATTCAGAGATGTACAGTCT 359434 Query 125288 ACTGATTGACATG-TACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATC 125345 || |||| || ||||| || | || | |||| | | ||||| |||| | Sbjct 359433 TCT-ATTGGAGTGTTACATCAAAGACAACACAGAGAAAACTCGT-CTCTTCCACGCCGTG 359376 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | || | | |||||||| | |||| ||| || |||||||||| | Sbjct 359375 GAGACTATTCCCTGCGTGAAGAAAAAGGCGGATTGGGCGATGCGATGGATCGATGGTGCG 359316 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||||| | || || || | ||||| || || ||| || || || || || || Sbjct 359315 GAGTCT---TTTGCTGAGAGGATTGTGGCTTTTGCTTGCGTGGAAGGGATATTTTTCTCT 359259 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 || || || || || || ||||| ||||| ||||| || ||||| |||||||| | Sbjct 359258 GGAAGCTTCTGTGCGATATTCTGGCTGAAGAAACGCGGTCTGATGCCTGGACTGACCTTC 359199 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| || ||||| ||||||| ||||| ||||| ||||| ||| Sbjct 359198 TCCAACGAATTGATATCGAGAGACGAAGGCCTCCACTGCGACTTCGCC 359151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741038561501280