Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq486 131 1e-25 seq1915 116 3e-21 seq1253 84.2 2e-11 >seq486 Length=444201 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | || | || | ||| |||||||| |||||||| |||||||| ||| Sbjct 170492 CCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCC 170551 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | |||||||| || ||||| || ||||||| ||||| ||||| || Sbjct 170552 AATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG 170611 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| | || ||| | || || ||||| | |||||| Sbjct 170612 ATACCTTCTTTGTCCTGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACC 170671 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || || || || ||||||||||| |||||||| Sbjct 170672 TCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 15166 GGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCC 15225 |||||| |||||||| |||||||| ||| | | | | | ||||| ||||| ||||| Sbjct 170293 GGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCC 170352 Query 15226 AGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTT 15285 ||| | |||||||| || ||||| ||| || ||||| ||||| || || |||| Sbjct 170353 TGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTT 170412 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 |||| | || ||||| || || || ||||| || |||||||| || || || || Sbjct 170413 TACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGT 170472 Query 15346 TTTTACAAAAATTTGCATA 15364 || || |||||||||||| Sbjct 170473 CTTGACGAAAATTTGCATA 170491 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | || |||||||| ||||| || |||||||| ||| Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| ||||| || ||||| | ||||| ||||| ||||| ||| Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||| || || ||| ||||| ||||||| | || ||||| || || || Sbjct 169472 ATAGCTTCCTTATCTTGAATCTTTGC-CTTTACATTGTCGATGGTGTCAGACGACTCAAC 169530 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||||||| || || || || || || |||||||||||| Sbjct 169531 TTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCATA 169579 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | ||| | |||||| ||||| || ||||| ||||||||||| Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || || || || ||||| | ||||| | || |||||| ||| Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 ||||| || ||||| ||| || ||| ||| | || || || || | || || || Sbjct 158859 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTC-CGATGACTCCAC 158801 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| |||||||| ||||| || || ||||| Sbjct 158800 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 15166 GGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCC 15225 |||||| |||||||| |||||||| ||| | | | | | ||||| ||||| ||||| Sbjct 169837 GGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCC 169896 Query 15226 AGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTT 15285 || | ||||||||||| ||||| ||| || ||||| ||||| || || |||| Sbjct 169897 TGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTT 169956 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| | || ||||| || || || ||||| || |||||||| || || || || Sbjct 169957 TACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGTGAGCGT 170016 Query 15346 TTTTACAAAAATTTGCATA 15364 || || ||||| |||||| Sbjct 170017 CTTGACGAAAATCTGCATA 170035 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | || | || | ||| || ||||| ||||| || ||||| || ||| Sbjct 170036 CCCCCTCTTAGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCC 170095 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||||||||| ||||| || | ||||| ||||||||||| ||| Sbjct 170096 AAAGTCCGGCCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGG 170155 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || |||||| ||| ||| | || ||||| || || || Sbjct 170156 ATACCTTCCTTATCTTGAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACC 170215 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||||||| || || || || || || ||||| |||||| Sbjct 170216 TCTAAAGTGATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCATA 170263 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| |||||||| || ||||| ||| | | | | | ||||| || ||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | ||||| ||||| ||||| ||| || ||||| || || ||||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || || ||||| || |||||||| || || Sbjct 169724 GCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTG 169783 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| |||||| Sbjct 169784 AGTGTCTTGACGAAAATCTGCATA 169807 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| |||||||| || ||||| || ||||||||||| || | | | | ||||| Sbjct 169142 ACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCTTCA 169201 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | ||||| | ||| || || ||| ||||| || ||||| Sbjct 169202 AGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGG 169261 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| |||||| | || |||||||| || || || | || ||||| || Sbjct 169262 ATCTTTGC-CTTTACGTTGTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTCTT 169320 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || ||||| |||||||| Sbjct 169321 TCCTGTCAAAGTCTTAACAAATATTTGCAT 169350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||||||| | | | | | |||||||| || Sbjct 173649 TGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTCTAACTGC 173708 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | |||||||| || ||||| ||| || ||||| || || |||||| Sbjct 173709 TTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTT 173768 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || || ||||| || || ||||| || || Sbjct 173769 GCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAGTG 173828 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| Sbjct 173829 AGCGTCTTGACGAAAATCTGCAT 173851 >seq1915 Length=652484 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || | || | ||| ||||| || ||||| || ||||||||||| Sbjct 300245 CCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300304 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||||| | | || || | |||||| || || | || | | ||||||||| || Sbjct 300305 AGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300364 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| || ||||||| | | | | |||||| | ||||||| Sbjct 300365 ATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCTACT 300424 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| ||||| || |||| || ||||| ||||||||||| Sbjct 300425 TCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || | ||| ||||| || ||||| || ||||||||||| Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||||| | | || || | |||||| || || | || | | ||||||||| || Sbjct 300077 AGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300136 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| || ||||||| | | | | |||||| | |||| || Sbjct 300137 ATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCACT 300196 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || || |||| || ||||| ||||||||||| Sbjct 300197 TCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Score = 111 bits (122), Expect = 1e-19 Identities = 170/242 (70%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || | ||| | || || ||||| || ||||||||||| Sbjct 300473 CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGCA 300532 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||||| | | || || | ||| || || || | |||| | ||||||||| || Sbjct 300533 AGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAGGG 300592 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| || ||||||||| | | | |||||| | ||| ||| Sbjct 300593 ATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTTACT 300652 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 || || ||||| ||||| |||||| || ||||| || |||||||| | | |||||| Sbjct 300653 TCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCATCTGT---AATAAA 300709 Query 15377 AT 15378 || Sbjct 300710 AT 300711 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | || | ||| ||||| || ||||| || ||||||||||| Sbjct 299789 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAA 299848 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||||| | || || | ||| || || || | || | | ||| ||||| || Sbjct 299849 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299908 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||||||| | | | | | |||| | ||||||| Sbjct 299909 ATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTACT 299968 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| || || || |||| || ||||| ||||||||||| Sbjct 299969 TCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | || | ||| || || || ||||| || || |||||||| Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||||| | || || | ||| || || || | || | | ||| ||||| || Sbjct 299621 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299680 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||||||||| | | | ||||| | ||||||| Sbjct 299681 ATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTACT 299740 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || |||| || ||||| ||||||||||| Sbjct 299741 TCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 >seq1253 Length=111296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | |||| || | ||||| ||||| ||||| || ||||||||||| Sbjct 79462 TGCCACCTCTGAGCCTTAGGACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCTG 79403 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| ||| | | |||||||| ||||| ||||| | |||| | ||||| || | Sbjct 79402 CCAGAGTTCGCCCATCTTCTAACTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCAGGGG 79343 Query 15255 GAATTCCTTCTTTGTC 15270 | || ||||||||||| Sbjct 79342 GTATCCCTTCTTTGTC 79327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362169365476548