Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq486 116 3e-21 seq1915 102 6e-17 >seq486 Length=444201 Score = 116 bits (128), Expect = 3e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | || | ||| | |||||| ||| |||||||||||| || || ||| Sbjct 170491 ACCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGC 170550 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || || || || |||||||||||||| ||||||||||| | || Sbjct 170551 CAATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGG 170610 Query 44014 TACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCA-TAGCAACAGTATCTGCCGGCTCC 44071 | ||||||||| | ||||| |||| |||| | || || | | ||||| | | || Sbjct 170611 GATACCTTCTTTGTCCTGAA--TTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCT 170668 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || || || || || |||| || || ||||| |||||||| Sbjct 170669 ACCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | ||| | ||||| ||| |||||| ||||| || || ||| Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| |||||||| ||||| ||||| ||||| ||||||||||| | || Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | | |||| |||||| ||| ||| || || | | | || || | || ||| || Sbjct 169472 ATAGCTTCCTTATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAACT 169531 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 169532 TCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | || | |||||| || || ||||| || || ||||| | Sbjct 158523 CCTCCTCTCAAACGAAGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATC-TGC 158465 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || ||| |||| ||||| || || || ||||| ||||||| |||||||| |||| Sbjct 158464 AAGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 158405 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || || ||| || || ||| || || ||| || || | | |||||| Sbjct 158404 GATTCCCTCCTTGTCTTGGATCTTAGCTTTCACATTATCAATTGTGTCCGAAGACTCCAC 158345 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || |||||||| | ||| |||||||| || ||||| Sbjct 158344 CTCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACAAAGATCTGCAT 158297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 ||||| ||| ||||||||||||||| || ||| || || |||| ||||| ||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||| ||||| ||||||||||| | || | ||||| |||||| ||||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 || || | | | || || | | ||| || || | || || ||||| ||||| Sbjct 169724 GCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTG 169783 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || || ||||| Sbjct 169784 AGTGTCTTGACGAAAATCTGCAT 169806 >seq1915 Length=652484 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTT 43953 ||||||||||||| | |||| ||| || || ||||| ||||| || ||||| | Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | || || ||||| || | |||||| |||||||| || | | ||| ||||| |||| Sbjct 300077 AGAATG-CGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGG 300135 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||| || || | | ||||| ||||||| | ||||| Sbjct 300136 GATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCAC 300195 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || || ||||| || || |||||||| Sbjct 300196 TTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | |||| ||| || || ||||| |||||||| ||||| Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | ||||| || | ||| || |||||||| || | | ||||||||| | || Sbjct 299621 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299680 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| |||||| || || | ||||| ||||||| | || || Sbjct 299681 ATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTACT 299740 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| || || || || ||||| || || |||||||| Sbjct 299741 TCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| || | |||| ||| || || ||||| ||||| || ||||| Sbjct 300245 CCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300304 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || | ||||| || | |||||| |||||||| || | | ||| ||||| |||| Sbjct 300305 AGAATG-CAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGG 300363 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||| || || | | ||||| ||||||| | || || Sbjct 300364 GATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCTAC 300423 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| || || || ||||| || || |||||||| Sbjct 300424 TTCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||||| | |||| ||| | || ||||| ||||| || ||||| Sbjct 300473 CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGCA 300532 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || | ||||| || | ||| || |||||||| |||| | ||| ||||| |||| Sbjct 300533 AGAATG-CAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAGG 300591 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || || || | ||||| ||||||| | | || Sbjct 300592 GATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTTAC 300651 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| | || || ||||| || ||||||||||| Sbjct 300652 TTCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||||| | |||| ||| || || ||||| ||||| || ||||| Sbjct 299789 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAA 299848 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | ||||| || | ||| || |||||||| || | | ||||||||| | || Sbjct 299849 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299908 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| |||||| || | | ||||| |||||| | || || Sbjct 299909 ATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTACT 299968 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| || || || || ||||| || || |||||||| Sbjct 299969 TCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354767966457744