Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq486 102 7e-17 seq841 86.0 5e-12 >seq486 Length=444201 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| ||| || ||||||||||| |||||||| || | || ||| Sbjct 173415 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCC 173474 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||||||| | | || ||||||||||| || || | || |||||| || | Sbjct 173475 AACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGA 173534 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||| | | | ||||| || | ||||| ||| | || |||||||| Sbjct 173535 ATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTTG 173594 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || ||||||||||| Sbjct 173595 CCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| ||||||||||| || || ||| || | ||||||| |||||| ||| | | Sbjct 158487 TCCTTTTGGATGTTGTAATCTGC-AAGTGTACGACCATCCTCCAACTGCTTCCCGGCAAA 158429 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || | |||||| || || | | |||||||| || || || | | Sbjct 158428 GATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCTTTCACATT 158369 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | ||||||| ||| | || ||||| |||||||||||||||||||| Sbjct 158368 ATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCAC 158309 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 158308 AAAGATCTGCATC 158296 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||| | ||| || ||| ||| |||||||||||||| || |||||| || | Sbjct 170503 CCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACC 170562 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 || || | |||||| || | | || || || ||||| || ||| | || ||| || Sbjct 170563 ATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTT 170622 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||| |||||| || | | | || ||||| | ||| || ||| | |||||| Sbjct 170623 GTCCTGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTAT 170682 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || || || ||||| ||||| || |||||| Sbjct 170683 GGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCATC 170719 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | || | |||||||||| |||||||| ||||||||||| | | Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTG-C 158921 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | ||||||| |||||| || | | || || | |||||| || || Sbjct 158920 AAGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGG 158861 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||| ||| ||| ||| | | | || || || | |||||| Sbjct 158860 AATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCAC 158801 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| ||||| || ||||| || || || ||||||||| Sbjct 158800 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCATC 158752 >seq841 Length=1035533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| ||||| || || ||||| || ||| || | ||||| ||||| Sbjct 649953 TGAAGAGTTGACTCCTTCTGAATATTATAGTCAGC-AAGTGTACGTCCATCCTCAAGCTG 650011 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || ||||||||||| || || | | ||| |||||| ||| || Sbjct 650012 CTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTT 650071 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | || ||||| | ||| || ||||| || || || || || || Sbjct 650072 GGCCTTCACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGT 650131 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| |||||||| Sbjct 650132 TAGGGTTTTCACAAAGATCTGCAT 650155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239761450228