Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq565 104 1e-17 seq615 100 1e-16 seq1370 95.1 6e-15 seq1075 93.3 2e-14 seq772 93.3 2e-14 seq219 91.5 8e-14 >seq565 Length=416303 Score = 104 bits (114), Expect = 1e-17 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTA--ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| | |||| |||||||| ||| ||||| || | | |||||||| |||||| Sbjct 38597 AAATAAACTATTATTATAAAAAAATAAAATGGCCTATACAGGTCTCGAACCTGTGACCTT 38538 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||||| |||| Sbjct 38537 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 38495 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 313994 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 314052 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11447 AAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| | || ||||| || | | |||||||| |||||||||||||||||||| |||| Sbjct 308660 AAATTATATATGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACAACGC 308719 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTC 11532 ||| ||||||||||||||| |||| || Sbjct 308720 TCTAACCAACTGAGCTAATAGGCCATC 308746 >seq615 Length=406643 Score = 100 bits (110), Expect = 1e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || |||||||||| | ||||| || | | |||||||| ||||||||||||||||| Sbjct 352434 ATAAATAAAAAATTTATATGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAG 352375 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 352374 CACGACGCTCTAACCAACTGAGCTAATAGGCC 352343 Score = 95.1 bits (104), Expect = 6e-15 Identities = 80/98 (82%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| || ||||||| | ||| |||| || | | |||||||| ||||||||||| Sbjct 342101 TATAAAAAAAATAAAATTTACAAT-GGCCTATACAGGTTTCGAACCTGTGACCTTCGCGT 342159 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| ||||||||||||||| |||| Sbjct 342160 TATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 342197 >seq1370 Length=802020 Score = 95.1 bits (104), Expect = 6e-15 Identities = 83/102 (81%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | ||| | ||||| || |||||| || | | |||||||| ||||||| Sbjct 412917 GAAATACAAAAT-ATTAAAATATTT--TTGGCCTATACAGGTCTCGAACCTGTGACCTTC 412973 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 412974 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 413015 >seq1075 Length=164542 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 48634 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 48693 >seq772 Length=310847 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 145194 TTGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 145253 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 145254 CTGAGCTAATAGGCC 145268 >seq219 Length=509159 Score = 91.5 bits (100), Expect = 8e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 || ||||||| || || | | ||||||| ||||||||||||||||||||||||||| Sbjct 226565 AAACAAATTGACCTATACAGGTCTCGAACCAGTGACCTTCGCGTTATTAGCACGACGCTC 226506 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||| |||| Sbjct 226505 TAACCAACTGAGCTAATAGGCC 226484 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484099533328