Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1624 136 6e-28 seq791 105 1e-18 seq1589 95.1 2e-15 >seq1624 Length=1424072 Score = 136 bits (150), Expect = 6e-28 Identities = 182/252 (72%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| |||||||||||||| ||||||||||| Sbjct 1356772 TCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTATCCGTCGTCTAGCTCGTCGTGG 1356713 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| || ||| | | ||||| |||| ||||| ||| |||| ||||| Sbjct 1356712 AGGCGTCAAACGTATCAGTGGTCTTATTTATGAGGAGACTCGTGGCGTTCTGAAAATCTT 1356653 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||||| ||| | | ||||| || || ||| | ||||| || Sbjct 1356652 CTTGGAGAATGTTATTAGGGATTCCGTGACGTATACTGAACATGCTCGGAGGAAGACCGT 1356593 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||| ||||| | || | ||||| | | | ||||| ||||| Sbjct 1356592 AACTGCCATGGATGTCGTGTATGCTCTTAAGAGGCAAGGGAGGACTTTGTATGGATTTGG 1356533 Query 16693 AAGTTA-ATCTT 16703 |||| ||||| Sbjct 1356532 CGGTTAGATCTT 1356521 Score = 113 bits (124), Expect = 7e-21 Identities = 177/252 (70%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||| || || || ||||| ||||| || ||||||||||| ||||||||||| Sbjct 1328252 TCTCCGTGATAATATTCAGGGTATCACGAAGCCCGCCATCCGTCGTCTAGCTCGTCGTGG 1328311 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| || ||| | |||| || |||| ||||| ||| |||| ||||| Sbjct 1328312 AGGCGTCAAACGTATCAGTGGTCTTATCTACGAGGAGACTCGTGGCGTTCTGAAAATCTT 1328371 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || || ||| | | ||||| ||||| ||| | ||||| || Sbjct 1328372 CTTGGAGAATGTGATTGGGGATTCCGTGACGTATACTGAGCATGCTCGGAGGAAGACCGT 1328431 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||| ||||| | || | ||||| | | | ||||| || || Sbjct 1328432 AACTGCCATGGATGTCGTGTATGCTCTTAAGAGGCAAGGGAGGACTTTGTATGGATTCGG 1328491 Query 16693 AAGTTA-ATCTT 16703 |||| ||||| Sbjct 1328492 TGGTTAGATCTT 1328503 >seq791 Length=295683 Score = 105 bits (116), Expect = 1e-18 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||||||||| || ||| | ||||| || | | || Sbjct 17242 TCTTCGTGATAACATCCAGGGTATCACCAAGCCGGCAATCAGGCGTCTCGCAAGAAGGGG 17301 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||| | | || | |||| || |||| ||| | ||| |||||||||| Sbjct 17302 AGGTGTGAAGAGGATTAGCGGTCTTATCTACGAGGAGACTCGAGGGGTTCTGAAGATCTT 17361 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| ||| || ||| || || ||||| || ||||| || |||||||| Sbjct 17362 TTTGGAGAACGTCATTAGAGATTCTGTCACTTATACTGAACACGCCCGTCGGAAGACTGT 17421 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || ||||| | ||||||||||| | | | |||||||| || Sbjct 17422 TACGGCCATGGACGTTGTTTATGCTCTCAAACGTCAAGGAAGAACTCTGTATGGTTTCGG 17481 Query 16693 AAGTTA 16698 | |||| Sbjct 17482 AGGTTA 17487 >seq1589 Length=726740 Score = 95.1 bits (104), Expect = 2e-15 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| ||||| || ||||||||||| ||||| || | |||||| | | || Sbjct 105853 CTCCGTGATAATATCCAGGGTATCACCAAGCCGGCTATACGGAGGCTGGCTAGGAGAGGA 105912 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || | | ||||| || | || | || | |||||||| Sbjct 105913 GGTGTTAAGAGGATCAGCGGTCTCATTTATGAGGAAACACGCGGAGTGCTCAAGATCTTT 105972 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||||||| |||| || | ||||| ||||| ||| ||||| || ||| Sbjct 105973 CTAGAGAACGTTATCCGTGATTCTGTTACTTATACAGAGCATGCTCGTCGTAAAACAGTC 106032 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | || ||||| | || ||||| ||| | | |||| || ||||| Sbjct 106033 ACTGCGATGGACGTAGTGTATGCGCTTAAGCGTCAGGGCAGGACTCTTTACGGATTTGGT 106092 Query 16694 AGTTA 16698 |||| Sbjct 106093 GGTTA 106097 Score = 80.6 bits (88), Expect = 4e-11 Identities = 161/239 (67%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| || || || ||||| |||||||| ||||| || ||| Sbjct 105019 GCGAAGAGACATCGGAAAGTTCTCCGTGACAATATCCAGGGAATCACTAAGCCGGCAATC 105078 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | || || || ||| | || || | |||| || || | Sbjct 105079 AGAAGATTGGCGAGGAGAGGAGGCGTGAAGAGGATCAGCGGTCTTATCTACGAGGAAGTG 105138 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | | || || || ||| | | ||| | |||||| | ||| |||||| Sbjct 105139 CGTGGTGTTCTAAGGACGTTTCTAGAGAGCATCATCAAAGATGCTGTGACCTACACCGAG 105198 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || ||||| || | | | ||||| |||||||||| ||||||| || || Sbjct 105199 CACGCACGTCGCAAGACGGTGATCGCAATGGACGTCGTCTATGCTCTGAAACGGCAGGG 105257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073162924004