Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq59 212 8e-50 seq2201 120 4e-22 >seq59 Length=545433 Score = 212 bits (234), Expect = 8e-50 Identities = 583/883 (66%), Gaps = 29/883 (3%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| |||||||| || || ||||| ||||| ||||| ||||| || | ||| || || Sbjct 338248 TTTCTGGTATTCTCCGACCCGTTTCTCGAAGAAATTTGTTTTCCCCTGCAAAGAAATCAA 338189 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||| ||||| | ||| || | ||| | | |||| | | Sbjct 338188 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTTCCATACCCCAGAGCTCCGAG 338129 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 33189 || | ||||||||||||||| || ||| |||||| ||| |||||||| | | Sbjct 338128 TAACCGATCCGCGACGAATTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAA 338069 Query 33190 AGTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 33247 || || |||||||| ||||| | |||||| || ||| || || || | || Sbjct 338068 AGCGCAA--GGAAGAGCATCGCAG--ACGAATTCTCTCTCGATGTCAACGGCGTCCGATA 338013 Query 33248 TAATAGATCTAACGGTT----TCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCA 33301 |||| |||| | || || ||| | | | | || |||| || Sbjct 338012 C----GATCCCACGGATCTTCTCCTCGCTCAGCTTCGTGTTCAGAAGACCGTAAAG--CA 337959 Query 33302 AACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGA 33361 |||| |||||||| ||||| ||||| |||||||| || | ||||||||| || || | Sbjct 337958 AACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCA 337899 Query 33362 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGA 33421 ||| ||||| || ||||| ||||| | ||| ||||| | | ||| |||||| || | Sbjct 337898 ATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAA 337839 Query 33422 AGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT 33478 | || ||||| || ||||||||| | | ||||| | || | || | ||| Sbjct 337838 ATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCG- 337780 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| |||||||| |||||||||||||||||||| || || || | ||| | Sbjct 337779 --ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGT 337722 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 ||| ||| |||| || |||||| | ||| || | | |||||| |||| Sbjct 337721 GAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACA 337662 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || ||||||||||| ||||| || ||||||||||||||||| | || || | | Sbjct 337661 TCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAGA 337602 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| || ||| | ||||| | |||| ||| ||| || || || || || | Sbjct 337601 CCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCCG 337542 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATT-CC 33775 |||| || || | || || | || |||| |||| ||||| ||| | || || Sbjct 337541 CAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCCC 337482 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 ||| | |||||| ||| | |||||| || || | ||||| || || ||||| || | Sbjct 337481 AATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCTT 337422 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 | || ||||| | ||| || || ||| | ||| || || || Sbjct 337421 TCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 150 bits (166), Expect = 2e-31 Identities = 389/587 (66%), Gaps = 13/587 (2%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 |||||| ||||| |||||||| || || |||||||| || | ||||||||| || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||||| ||||| || || || || || ||||| ||||| | | ||| |||||| || Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCGCACAGAAGCTTCCAGAGAA 359264 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCAT 33478 || || ||||| || |||||| || | || ||||| || || | ||| ||| Sbjct 359265 AAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCAC-CAT 359323 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| |||||||| ||||| || || || || || || || || | ||| | Sbjct 359324 CGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGCGT 359383 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 |||||| |||| || | | ||||| | ||| || | | |||||| |||| Sbjct 359384 GGAAGAGACGAGTTTTCTCTGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGTACA 359443 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || ||||| ||||| || || || ||||||||||| ||||| | ||||| | | Sbjct 359444 TCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCGAGA 359503 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| || ||| | ||||| | |||| ||| || || || ||||| || | Sbjct 359504 CCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATGCCG 359563 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCC 33775 |||| || || | || || | || || | |||| || | || || | |||| Sbjct 359564 CAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGT-TGTCGGTAAGGGTGTGTTCC 359622 Query 33776 AATCATTGA----TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 || ||| |||| | || | ||| || ||||| | |||||||| || || || Sbjct 359623 ---CAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTCA 359679 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || || |||||||| | ||| | || ||| | |||||| || || Sbjct 359680 GCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424 |||| |||||| || || | || | || |||| ||| | ||||| |||||||||| Sbjct 456667 TTTGCCTCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAAC 456608 Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484 ||| || ||||| | |||||||| || |||||| || ||| |||||||||||||| Sbjct 456607 AATGCCATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATG 456548 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 | || | ||||||||||||||| ||| ||||| || || ||| | ||||| Sbjct 456547 CACAGAAACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTC 456488 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||| || ||||| || || ||||| ||||| | || ||||| ||| Sbjct 456487 ATATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Score = 82.4 bits (90), Expect = 1e-10 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 62879 AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62938 |||| || | ||||||| |||||||||||| ||||| ||| |||| | | | | Sbjct 457639 AAACGTGGT-AAGGCAATAGATGCCAGATTGCAAACTGCTGTTTCATCTGGACTAGTGAA 457581 Query 62939 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACT 62998 || |||||||| ||||| | ||| | ||||||| ||||| | |||||||||||| || Sbjct 457580 TTCAATTATCTCTGTGCATAAATTTGAAGACTTGATTGTTCCAAGATTTTGTTGATTGCT 457521 Query 62999 CTTTTTGTTACACGCATCCT 63018 ||| | || || | ||||| Sbjct 457520 TTTTCTATTGCAAGTATCCT 457501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622929850920480