Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1915 122 8e-23 seq486 98.7 1e-15 seq1364 82.4 7e-11 seq1253 82.4 7e-11 >seq1915 Length=652484 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || ||||| ||||| || || ||| | || || | ||| ||||| | Sbjct 300472 AATGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTC 300413 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||| | | | | | || |||||| ||||||||||| || ||||| || || Sbjct 300412 AGATACCGTTGCGAATATAAAGAGTAAGATTCAAGACAAAGAAGGTATCCCTCCAGACCA 300353 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||||||||| | | || |||||||| || |||||| | | | || || || Sbjct 300352 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGCATTCTTGCTGATTACAA 300293 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| |||||||| || |||||||||| || |||| |||||||||| Sbjct 300292 CATTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGGAA 300243 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| ||||| || | ||| | || || | ||| || || | Sbjct 300699 ATGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCA 300640 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||| | | | | || || |||||| ||||||||||| || ||||| || ||| Sbjct 300639 GATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAA 300580 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | | || || ||||| || |||||| | | | || || ||| Sbjct 300579 CAAAGACTGATCTTTGCAGGTAAGCAACTTGAGGATGATTGCATTCTTGCTGATTACAAC 300520 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| |||||||| |||||||||||||| || || | |||||||||| Sbjct 300519 ATTCAGAAAGAATCGACTATCCATCTGGTACTCCGATTGAGAGGAGGAA 300471 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||||||||| || ||||| || |||||||||||||| | | || ||| Sbjct 300159 AAGATTCTAGACAAAGAAGGTATCCCTCCAGACCAACAAAGACTCATCTTTGCAGGTAAA 300100 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||| || |||||| | | | || || |||||||| |||||||| || ||||| Sbjct 300099 CAACTTGAGGATGATCGCATTCTTGCTGATTACAACATTCAGAAAGAATCGACCCTCCAT 300040 Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| | || | |||||||||| Sbjct 300039 CTGGTAATCCGATTGAGAGGAGGAA 300015 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || ||||| || || || || || | || || | ||| ||||| | Sbjct 299788 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATTACTTTGGAAGTAGAAACTTC 299729 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || | | | | || || || ||| ||||||||||| || || || || || Sbjct 299728 AGATACGGTTGCGAATGTAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299669 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | | || || ||||| || |||||| | | || || || Sbjct 299668 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299609 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| |||||||| ||| |||||||||| || | | |||||||||| Sbjct 299608 TATTCAGAAAGAATCGACTCTCCATCTGGTACTTCGGTTGAGAGGAGGAA 299559 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || ||||| ||||| || || || | || || | ||| ||||| | Sbjct 300016 AATGCAAATTTTCGTAAAGACATTGACGGGCAAGACAATTACTTTAGAAGTAGAAACTTC 299957 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || | | | | | | | || || ||| ||||||||||| || || || || || Sbjct 299956 AGATATCGTTGCGAATATAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299897 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | | || || ||||| || |||||| | | || || || Sbjct 299896 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299837 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| |||||||| || |||||||||| | || | |||||||||| Sbjct 299836 CATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGGAA 299787 >seq486 Length=444201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||||||| |||| ||||| | || || | || ||||||| Sbjct 170718 ATGCAAATCTTTGTAAAAACACTAACGGGAAAGACCATAACATTAGAGGTAGAATCTTCT 170659 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || ||| || ||| ||||||||||| || || || || || Sbjct 170658 GATACAATCGATAATGTTAAAACTAAAATTCAGGACAAAGAAGGTATCCCGCCAGACCAG 170599 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | | ||||| || | ||||||| | | | | |||||| ||| Sbjct 170598 CAACGATTGATATTTGCAGGCAAGCAGTTAGAAGATGGTCGTACATTGGCCGACTACAAC 170539 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || || | ||||| || || || || ||||| || Sbjct 170538 ATTCAAAAAGAGTCCACCCTACATCTTGTGCTTAGGCTAAGAGGGGG 170492 >seq1364 Length=85398 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| || || | || || ||| |||| || |||| | || || Sbjct 46321 AAGATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACGATTACTCTCGAGGTTGAGTCC 46380 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | ||||| |||||| || || ||||| || || || || Sbjct 46381 TCGGACACGATCGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGAC 46440 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || ||| || ||||| || || | | | || |||||| Sbjct 46441 CAGCAGCGTCTTATCTTCGCCGGGAAGCAACTGGAGGACGGACGCACTCTCGCCGACTAC 46500 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||||||||| || |||||||||| || | || || ||||| Sbjct 46501 AACATCCAAAAAGAATCGACGCTCCATCTGGTTCTCCGTCTGAGGGGAGG 46550 >seq1253 Length=111296 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||||||||| || |||||||| ||||| || | | || ||||| | ||| Sbjct 79327 GACAAAGAAGGGATACCCCCTGATCAACAGAGACTGATCTTTGCTGGAAAACAGTTAGAA 79386 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | || || |||||||| ||||| || ||| | || || ||||| Sbjct 79387 GATGGGCGAACTCTGGCAGATTACAACATTCAGAAAGAGTCCACTCTTCACCTTGTCCTA 79446 Query 26982 AGACTTAGAGGAGGAAAAAT 27001 || || ||||| || | ||| Sbjct 79447 AGGCTCAGAGGTGGCACAAT 79466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649069252160