Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1915 105 6e-18 seq1364 86.0 5e-12 >seq1915 Length=652484 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| ||||| || | ||| | ||||| | ||||| | | Sbjct 300699 ATGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCA 300640 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||| | | | | || || |||||| |||||||||||||| ||||| || ||| Sbjct 300639 GATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAA 300580 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||||||| | | || |||||||| || ||||| | | | ||||| ||| Sbjct 300579 CAAAGACTGATCTTTGCAGGTAAGCAACTTGAGGATGATTGCATTCTTGCTGATTACAAC 300520 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| |||||||| || || ||| | || | |||||||||||||| Sbjct 300519 ATTCAGAAAGAATCGACTATCCATCTGGTACTCCGATTGAGAGGAGGA 300472 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||| ||||| || || ||| | ||||| | ||||| || | Sbjct 300472 AATGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTC 300413 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||| | | | | | || |||||| ||||||||||| || ||||| || || Sbjct 300412 AGATACCGTTGCGAATATAAAGAGTAAGATTCAAGACAAAGAAGGTATCCCTCCAGACCA 300353 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | | || || ||||| || ||||| | | | ||||| || Sbjct 300352 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGCATTCTTGCTGATTACAA 300293 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| |||||||| || | ||| | || | || ||||||||||| Sbjct 300292 CATTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGGA 300244 >seq1364 Length=85398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | || || ||| ||||||| |||| || ||| || Sbjct 46321 AAGATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACGATTACTCTCGAGGTTGAGTCC 46380 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | ||||| |||||| || || |||||||| || || || Sbjct 46381 TCGGACACGATCGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGAC 46440 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||| |||||||| || || | | | || ||| || Sbjct 46441 CAGCAGCGTCTTATCTTCGCCGGGAAGCAACTGGAGGACGGACGCACTCTCGCCGACTAC 46500 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 46501 AACATCCAAAAAGAATCGAC 46520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429924325625340