Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq486 109 5e-19 seq1915 100 2e-16 >seq486 Length=444201 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| ||||||||||| || | || ||||| Sbjct 170262 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAAACCATCACTTTAGAGGTTGAGTCGTCT 170203 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || ||||||| ||||| ||||| |||| || || Sbjct 170202 GACACCATTGATAATGTTAAGGCAAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 170143 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| ||||| ||||||||||||| | || ||||||| |||||| Sbjct 170142 CAACGCTTGATCTTTGCAGGCAAGCAATTAGAAGATGGCCGGACTTTGGCCGACTATAAC 170083 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| |||||||| || ||||| | ||| Sbjct 170082 ATTCAGAAAGAGTCCACACTACATCTTGTG 170053 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| |||||||| || |||||||| || | ||| ||||| Sbjct 169578 ATGCAAATTTTCGTCAAGACGCTCACCGGCAAAACCATCACTTTAGAAGTTGAGTCGTCT 169519 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| ||||| ||| ||| ||||| |||| |||| || || Sbjct 169518 GACAC-CATCGACAATGTAAAGGCAAAGATTCAAGATAAGGAAGCTATCCCACCAGACCA 169460 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | | || | ||| || || ||||| ||||||| || ||||||| || || Sbjct 169459 GCAACGCTTGATCTTTGCTGGAAAGCAATTGGAAGATGGTCGTACTTTGGCCGACTACAA 169400 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| |||||||| || |||| | ||| | | ||| |||| |||| Sbjct 169399 CATTCAGAAAGAGTCCACCCTACACCTTGTGCTCCGTTTGAGAGGTGGAA 169350 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| ||||||||||| || | || |||| Sbjct 169806 ATGCAGATTTTCGTCAAGACACTCACCGGAAAAACCATCACTTTAGAGGTTGAGTTGTCT 169747 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || ||||| ||||| |||||| |||| || || Sbjct 169746 GACACCATCG-ACAATGTTAAGGCGAAAATCCAAGATAAGGAAGGCATCCCACCAGACCA 169688 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | | || | ||| |||||||| || ||||||| || ||||||| || || Sbjct 169687 GCAACGCTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTTTGGCCGACTACAA 169628 Query 115465 CATTCAAAAAGAGTCTACTATACA 115488 |||||||||||||| || |||| Sbjct 169627 TATTCAAAAAGAGTCCACCCTACA 169604 >seq1915 Length=652484 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || || ||| | ||||| || || ||||| | ||| || | Sbjct 299788 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATTACTTTGGAAGTAGAAACTTC 299729 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || |||| | ||||| |||||| || ||||||||| ||||| ||| || Sbjct 299728 AGATACGGTTGCGAATGTAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299669 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| || | ||| || || ||| | || ||||| | | | | ||||| || Sbjct 299668 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299609 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| || ||| | ||| |||| | | ||| ||||||||| Sbjct 299608 TATTCAGAAAGAATCGACTCTCCATCTGGTACTTCGGTTGAGAGGAGGAA 299559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || || || | ||||| || || ||||| | ||| || | Sbjct 300016 AATGCAAATTTTCGTAAAGACATTGACGGGCAAGACAATTACTTTAGAAGTAGAAACTTC 299957 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || | |||| | |||| |||||| || ||||||||| ||||| ||| || Sbjct 299956 AGATATCGTTGCGAATATAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299897 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| || | ||| || || ||| | || ||||| | | | | ||||| || Sbjct 299896 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299837 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| ||||| || || | ||| |||| | ||||| ||||||||| Sbjct 299836 CATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGGAA 299787 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || || ||| | ||||| || || || || | ||| ||| | Sbjct 300244 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATGACATTAGAAGTGGAAACTTC 300185 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || |||| | |||| || ||| || |||||||| |||| || || Sbjct 300184 AGATACCGTTGCGAATATAAAGAGTAAGATTCTAGACAAAGAAGGTATCCCTCCAGACCA 300125 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||||| || | ||| || |||||| | || ||||| | | || ||||| || Sbjct 300124 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATCGCATTCTTGCTGATTACAA 300065 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| ||||| || || | ||| |||| | ||||| ||||||||| Sbjct 300064 CATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGGAA 300015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425332450315360