Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1915 145 5e-30 seq1624 118 7e-22 seq486 107 1e-18 seq841 96.9 2e-15 >seq1915 Length=652484 Score = 145 bits (160), Expect = 5e-30 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| || | |||| ||| ||||| || || ||||||||||||| Sbjct 299557 CATT-CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAAT 299615 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | || | | || || || | ||| || || ||||| || || | ||| || || | Sbjct 299616 CAGAAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAG 299675 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| |||||||||||| |||||| ||| |||||| || |||||| | ||| Sbjct 299676 GGGGGATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTT 299735 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||| || || |||||||| || || ||||| || ||||| Sbjct 299736 CTACTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| || | |||| ||| || || || || ||||| ||||||| Sbjct 299785 CATT-CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAAT 299843 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | || | | || || || | ||| || || ||||| || || | ||| || || | Sbjct 299844 CAGAAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAG 299903 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| |||||||||||| |||||| ||| | |||| || ||||| | ||| Sbjct 299904 GGGGGATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTT 299963 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||||| ||||| || || |||||||| || || ||||| || ||||| Sbjct 299964 CTACTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| || | |||| ||| || || || || ||||| ||||||| Sbjct 300013 CATT-CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAAT 300071 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | || || || || || | |||||| || ||||| || || | |||||| || | Sbjct 300072 CAGCAAGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTG 300131 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||||| | ||| || ||| | |||| || |||||| | ||| Sbjct 300132 GAGGGATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTT 300191 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||||||||| || || || |||||||| || || ||||| || ||||| Sbjct 300192 CCACTTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| || | |||| ||| || || || || ||||| ||||||| Sbjct 300241 CATT-CCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAAT 300299 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | || | || || || | |||||| || ||||| || || | |||||| || | Sbjct 300300 CAGCAAGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTG 300359 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||||| ||| || ||| | |||| || |||||| | ||| Sbjct 300360 GAGGGATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTT 300419 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 300420 CTACTTCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| || | |||| ||| | ||| || || ||||| ||||||| Sbjct 300469 CATT-CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAAT 300527 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | || | || || || | ||| || || ||||| || || | |||||| || | Sbjct 300528 CAGCAAGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTG 300587 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||||||||| ||| || ||| |||||| || |||||| | ||| Sbjct 300588 GAGGGATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTT 300647 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||| ||||| | ||||| || || |||||||| ||||| Sbjct 300648 TTACTTCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 >seq1624 Length=1424072 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||| |||||||||||||||||||||| || | || |||||||| Sbjct 1348360 AAGCCTGTTCCCTTGGTTGTGGTTTCGCTAGATAGTAGACAGAGACAGTGGGAATCTCGT 1348301 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 1348300 TAATCCATTCATGCACGTCACTAATTAGATGACGA 1348266 >seq486 Length=444201 Score = 107 bits (118), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||||||| | ||| | || || ||| ||| || ||||| ||||| | Sbjct 169348 CATT-CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGT 169406 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | |||| ||| | || || ||||| ||||| ||||| || | |||||| || || | Sbjct 169407 CGGCCAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTG 169466 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACT 38263 |||| |||| || || ||| ||| ||| ||||| | || || || | || Sbjct 169467 GTGGGATAGCTTCCTTATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGAC- 169525 Query 38264 TTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||||| || || ||||| || || | || || ||||| || ||||| Sbjct 169526 -TCAACTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | | | ||| | ||| || ||| ||| |||||||| ||||| || | Sbjct 170490 TACCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGG 170549 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || ||||| || || || |||||||| | ||||| || || | | Sbjct 170550 CCAATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCG 170609 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| |||||| || ||||| | || ||||| | ||| | Sbjct 170610 GGATACCTTCTTTGTCCTGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTA 170669 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||||| || || || ||||| | ||||| || || || ||||| Sbjct 170670 CCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| ||| |||||||||||||| || | |||| || | || || || ||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || | |||||| || || | |||| |||||| || || ||||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 38235 TGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 ||| ||||| | || || || | || ||||| ||||| || || ||||| || | Sbjct 169724 GCCTTAACATTGTCGATGGTGTCAGACAAC--TCAACCTCTAAAGTGATGGTTTTTCCGG 169781 Query 38293 TCAAGGTTTTCACGAATATCTGCAT 38317 | | || || ||||| |||||||| Sbjct 169782 TGAGTGTCTTGACGAAAATCTGCAT 169806 >seq841 Length=1035533 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| |||||||| |||||| |||||||| || |||| | |||| | || || Sbjct 649947 ACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCA 650006 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || ||||| || || | || || || || | |||| |||||||||||| | Sbjct 650007 AGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 650066 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || |||||| || | || ||||| | ||| || || | || || || || Sbjct 650067 ATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTC 650126 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| | ||||||||| || |||||||||||| Sbjct 650127 CCCGTTAGGGTTTTCACAAAGATCTGCATGTTT 650159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938104927468