Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq59 183 4e-41 seq2201 129 7e-25 >seq59 Length=545433 Score = 183 bits (202), Expect = 4e-41 Identities = 401/591 (68%), Gaps = 21/591 (4%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 |||||| |||||||| ||||| ||||| |||||||| || ||||||||||| || || Sbjct 337960 CAAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 337901 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 | ||| ||||| || ||||| ||||| | ||| ||||| | | || || |||||| | Sbjct 337900 CAATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCG-CACAGAAACTTCCAGAGA 337842 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 32832 | || || ||||| || |||||||| | | ||||| | || | || | || Sbjct 337841 AAAATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGT 337782 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | ||||| |||||||| |||||||||||||||||||| || ||||| | | Sbjct 337781 CG---ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGG 337725 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA----AAGA 32948 | | ||| ||| |||| || |||||| | |||| || || | |||| Sbjct 337724 CGTGAAATAGACGAGTTTTCTCTGCGGAATCTTTGA----TGTAACACTCCAGGAGAAGA 337669 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGC 33007 || ||||| || ||||||||||| ||||| || || |||||||||||||| ||| | || Sbjct 337668 CTGTACATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCA-CGTGC 337610 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 || | | ||| || ||| | ||||| | || | ||| ||| || || || || Sbjct 337609 TTCTGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATC 337550 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGT 33125 || ||||| || || | || || | || |||| |||| ||||| ||| Sbjct 337549 GGACGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGT 337490 Query 33126 TTATT-CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 | || ||||| | |||||| ||| | ||| || || || | ||||| || || || Sbjct 337489 ATGTTCCCAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGC 337430 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 ||| || || || ||||| | ||| || || |||| | || ||||| || Sbjct 337429 CTCGGCTTTCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 138 bits (152), Expect = 1e-27 Identities = 391/592 (66%), Gaps = 23/592 (4%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 |||||| ||||| |||||||| || || |||||||| || ||||||||||| || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 ||||| ||||| || || || || || ||||| ||||| | | || || |||||| | Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCG-CACAGAAGCTTCCAGAGA 359263 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGCTGTCA 32834 | || || ||||| || ||||| || | || ||||| || || | ||| || Sbjct 359264 AAAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGC-ACCA 359322 Query 32835 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 32894 | ||||| |||||||| ||||| || || || || || || ||||| | || Sbjct 359323 TCGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGCG 359382 Query 32895 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC----AAAAGACT 32950 | |||||| |||| || | | ||||| ||||| || || | |||||| Sbjct 359383 TGGAAGAGACGAGTTTTCTCTGTGTTGTCTTT----GATGTAACACTCCAATAGAAGACT 359438 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 ||||| || ||||| ||||| || || || || |||||||| ||||| | ||||| Sbjct 359439 GTACATCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTC 359498 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | | ||| || ||| | ||||| | || | ||| || || || ||||| Sbjct 359499 CGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGA 359558 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTT 33127 || ||||| || || | || || | || || | |||| || | || || | Sbjct 359559 TGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGT-TGTCGGTAAGGGTGT 359617 Query 33128 ATTCCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 |||| || ||| |||| | || | ||| || ||||| | |||||||| || | Sbjct 359618 GTTCC---CAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACG 359674 Query 33184 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | || || || |||||||| | ||| | || |||| | |||||||| || Sbjct 359675 CTTCAGCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 63220 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63279 |||| |||||| || || | || | || |||| ||| | ||||| |||||||||| Sbjct 456667 TTTGCCTCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAAC 456608 Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339 ||| ||||| || || ||||||||||| |||||| || ||| |||||||||||||| Sbjct 456607 AATGCCATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATG 456548 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 | || | ||||||||||||||| ||| ||||| || || ||| | || || Sbjct 456547 CACAGAAACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTC 456488 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||| || ||||| ||||| ||||| ||||| | || ||||| ||| Sbjct 456487 ATATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614353348800