Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq59 194 2e-44 seq115 95.1 1e-14 seq1999 93.3 5e-14 seq1274 93.3 5e-14 >seq59 Length=545433 Score = 194 bits (214), Expect = 2e-44 Identities = 589/897 (66%), Gaps = 20/897 (2%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| |||||||| || || ||| || ||||||||||| || || | |||||| ||| | Sbjct 338248 TTTCTGGTATTCTCCGACCCGTTTCTCGAAGAAATTTGTTTTCCCCTGCAAAGAAATCAA 338189 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCA--CCGATCAACTCGTAC 92917 | || | | | |||||| || | || ||||| || || | ||| | Sbjct 338188 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTTCCATACCCCAGAGCTCCGAG 338129 Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 ||| | ||| || || ||||| ||||| || ||||| | ||| |||||||| | Sbjct 338128 --TAACCGATCCGCGACGAATTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACC 338071 Query 92978 AGA-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | | || | ||| ||||| ||| | ||| ||| ||||||| ||||||| || | Sbjct 338070 AAAGCGCA-AGGAAGAGCATCGCAGACGAATTCTCTCTCGATGTCAACGGCGTCCGATAC 338012 Query 93037 GATTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| | | ||| || | | | | || ||| | | | | ||| | || || Sbjct 338011 GATCCCACGGA-TCTTCTCCTCGCTCAGCTTCGTGTTC-AGAAGACCGTAAAGCAAACAG 337954 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || || || | ||||||||||| |||||||| || ||| ||| || || || Sbjct 337953 GCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAATCCA 337894 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | ||| || ||||| || | ||| ||||| | | ||||| ||||| |||||||| Sbjct 337893 GGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAATATC 337834 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||||||| ||||| ||||| || | || || ||| | | || | |||| Sbjct 337833 CCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCG---CACCGTCGATC 337777 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 ||| | |||||||| || || || || | |||||| | || || | |||| |||| Sbjct 337776 CATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAAT 337717 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | | ||| | |||||| ||||| || | | ||| ||||| || Sbjct 337716 AGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACATCTCG 337657 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||||| | ||||| || || || || ||||||||||| | ||||| | || ||| Sbjct 337656 GAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAGACCTGG 337597 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 || |||| |||| | | ||||| ||| ||| ||||||||||| || ||||| Sbjct 337596 ACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCCGCAAAG 337537 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA---TCCCAATCG 93571 ||||| | | || | || ||||| ||| | | | || || ||||||| | Sbjct 337536 AAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCCCAAT-G 337478 Query 93572 GATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 || ||||| || ||||| || || ||| | ||||| || || || || ||||| || Sbjct 337477 ACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCTTTCTT 337418 Query 93631 GTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 |||||| |||||||| || |||| | || ||||| ||| || |||| ||||| Sbjct 337417 GTACATTTCCCATATCTCCGGATAATTGATCGGAAACATGCAGAACCGATCGGGGTT 337361 >seq115 Length=1259528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || | | || Sbjct 1148688 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTATGAGGGC 1148747 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 ||||||||||||||||| ||||| | || ||| | |||| Sbjct 1148748 GTGGGTTCGAACCCCACTTCTGACCATTTTTTAATAAAATT 1148788 >seq1999 Length=638737 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || || | || Sbjct 66984 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTACGAGGGC 67043 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 67044 GTGGGTTCGAACCCCACTTCTGACA 67068 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || || | || Sbjct 604009 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTACGAGGGC 603950 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 603949 GTGGGTTCGAACCCCACTTCTGACA 603925 >seq1274 Length=102921 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/97 (82%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 46738 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTATGAGG 46681 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||| ||||| |||||| || Sbjct 46680 GCGTGGGTTCGAACCCCACTTCTGAC--ATTATTTTT 46646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845291426720