Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1915 125 5e-24 seq1253 87.8 1e-12 >seq1915 Length=652484 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || ||||| ||||||||||| ||||| ||||| ||| | | Sbjct 300472 AATGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTC 300413 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || || || || | ||| || ||| || ||||| ||| | ||| | |||| Sbjct 300412 AGATACCGTTGCGAATATAAAGAGTAAGATTCAAGACAAAGAAGGTATCCCTCCAGACCA 300353 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| ||||| |||||||| || |||||||| || ||| | | | || |||||||| Sbjct 300352 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGCATTCTTGCTGATTACAA 300293 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| ||||| || || ||| ||||| | || | |||||||| Sbjct 300292 CATTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGGA 300244 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || |||||||| || ||||| ||||| ||| | | Sbjct 299788 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATTACTTTGGAAGTAGAAACTTC 299729 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||||| || || | ||| |||||| || ||||| || | || |||| Sbjct 299728 AGATACGGTTGCGAATGTAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299669 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || ||||| |||||||| || || ||||| || ||| | | | | | |||||||| Sbjct 299668 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299609 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||| ||||| ||||| ||| ||||| | || || |||||||| Sbjct 299608 TATTCAGAAAGAATCGACTCTCCATCTGGTACTTCGGTTGAGAGGAGGA 299560 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| | || ||||| || | |||||| ||||| ||||| || | || Sbjct 300699 ATGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCA 300640 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || || || | ||| || ||| || ||||| || | ||| | ||||| Sbjct 300639 GATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAA 300580 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| |||||||| || || ||||| || ||| | | | || |||||||| Sbjct 300579 CAAAGACTGATCTTTGCAGGTAAGCAACTTGAGGATGATTGCATTCTTGCTGATTACAAC 300520 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| ||||| ||| | ||| ||||| | || || |||||||| Sbjct 300519 ATTCAGAAAGAATCGACTATCCATCTGGTACTCCGATTGAGAGGAGGA 300472 >seq1253 Length=111296 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||||||||| ||||||||||| ||||| |||||||| |||| |||| |||||| Sbjct 79351 CAACAGAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGGCGAACTCTGGCAGATTAC 79410 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || || |||||||| Sbjct 79411 AACATTCAGAAAGAGTCCACTCTTCA 79436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358115075568712