Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1364 149 1e-30 seq841 138 3e-27 seq486 132 1e-25 seq636 89.7 1e-12 >seq1364 Length=85398 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| |||||||||||| || ||||||||||| ||||||||||| Sbjct 46535 AGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCC 46476 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||| || || |||||||| |||||||| || |||||| ||||| |||||| Sbjct 46475 TCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCC 46416 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || || || || || | || || || || ||||| || ||||| Sbjct 46415 TGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTAATCGTT 46356 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || || |||||||| Sbjct 46355 TTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 46324 >seq841 Length=1035533 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||||||||| || || || ||||| || || | || || || |||||| Sbjct 649965 TCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAG 650024 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || ||||||||||||||| ||||| || || || |||||||| Sbjct 650025 ATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTA 650084 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || ||||| |||||||||||||| || || || || || Sbjct 650085 TCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACA 650144 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 650145 AAGATCTGCAT 650155 >seq486 Length=444201 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || |||||||| || || | ||| |||||||| ||||| |||||||| | ||||| Sbjct 169589 AGCCTAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGA 169648 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| || ||||| || || ||||||| || || || |||||| ||||| Sbjct 169649 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCC 169708 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||| ||||||||||| || || || || || | || | | || || || | ||| Sbjct 169709 TTATCTTGGATTTTCGCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTG 169768 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||||||||| |||||||| Sbjct 169769 ATGGTTTTTCCGGTGAGTGTCTTGACGAAAATCTGCAT 169806 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| ||||| || || || | ||| |||||||||||| || |||||||| Sbjct 170264 CCTCCTCTGAGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCC 170323 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| ||||| || ||||||||||||| |||||| || |||| Sbjct 170324 AAAGTACGACCATCTTCCAATTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGGG 170383 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || | || || || || || | || ||| || || Sbjct 170384 ATACCTTCCTTGTCCTGTATCTTAGTCTTTACATTGTCGATGGTGTCAGACGACTCAACC 170443 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || ||||| || ||||||||||| || ||||| Sbjct 170444 TCTAAAGTGATGGTTTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 170490 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || ||||| || ||||| | ||| ||||| || || ||||||||||| | || || Sbjct 170045 AGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGG 170104 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||||||||| || ||||| ||||||| || ||||| |||||| ||||| Sbjct 170105 CCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCC 170164 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||| || ||||| || || || || || || | || ||| || || || | ||| Sbjct 170165 TTATCTTGAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACCTCTAAAGTG 170224 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||||||||| |||||||| Sbjct 170225 ATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| ||||| || || || | ||| |||||||||||| || |||||||| Sbjct 169808 CCCCCTCTGAGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCC 169867 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| ||||| || ||||| ||||||| ||| || || |||| Sbjct 169868 AAAGTACGACCATCTTCCAATTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGTGGG 169927 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || | || ||||| || || | || ||| || || Sbjct 169928 ATACCTTCCTTGTCCTGTATCTTAGTCTTTACGTTGTCGATGGTGTCAGACGACTCAACC 169987 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || || ||||||||||| |||||||| Sbjct 169988 TCTAAAGTGATGGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 170034 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | |||| ||| ||||| || || || ||||| || Sbjct 173397 CCACCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCC 173456 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| || || || ||||| ||||||| |||||| || |||| Sbjct 173457 AAAGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGG 173516 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| | || || || || || | || ||| || || Sbjct 173517 ATACCTTCCTTATCTTGAATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACC 173576 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||| || || ||||| || ||||||||||| |||||||| Sbjct 173577 TCTAACGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||||| ||| || || || | |||| ||||| || || || || ||||| Sbjct 173625 CCCCCTCTGAGTCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCC 173684 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || |||||||| || || ||||| ||||||| |||||| || |||| Sbjct 173685 AAAGTACGACCATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGG 173744 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| || || || || || || | || ||| || || Sbjct 173745 ATACCTTCCTTATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACC 173804 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||| || || || || || ||||||||||| |||||||| Sbjct 173805 TCTAACGTGATTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 173851 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||||| || ||| |||||||| || || || || Sbjct 159207 CCACCACGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 159148 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || || || ||||| || ||||||| | ||| || ||| Sbjct 159147 AGGGTCCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGG 159088 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || ||||| ||||||||||| || || || | || || || || Sbjct 159087 ATTCCCTCCTTGTCTTGGATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACC 159028 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 159027 TCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||||| ||| ||| || ||||||||||| || || || || || || || Sbjct 158737 AAGAACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGACCATC 158678 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || || || || || || || |||| | ||| || | |||||||| || || || Sbjct 158677 CTCCAACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTC 158618 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || || ||||| ||||| || || || | || || || || || | ||||| || Sbjct 158617 TTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGT 158558 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||||||||| ||||| |||||||| Sbjct 158557 CTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158525 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || |||||||| | || || || ||||| ||||| ||||| || ||| Sbjct 169388 TCTTTCTGAATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAG 169447 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || |||||| |||| ||||| || || || || || || || Sbjct 169448 ATCAAGCGTTGCTGGTCTGGTGGGATAGCTTCCTTATCTTGAATCTTTGCCTTTACATTG 169507 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||| || ||||| | ||||| || || ||||| || ||||||||| Sbjct 169508 TCGATGGTGTCAGACGACTCAACTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACG 169567 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 169568 AAAATTTGCAT 169578 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||||| ||| ||| |||||||| || || || || || || || || || Sbjct 158965 AAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATC 158906 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || || || || || || ||||||| | ||| || || ||||| || || || Sbjct 158905 CTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGAATTCCCTCCTTGTC 158846 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || || ||||| ||||| || || || | || || || || || | ||||| || Sbjct 158845 TTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGT 158786 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||||||||| ||||| |||||||| Sbjct 158785 CTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 >seq636 Length=371348 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || || ||||| ||||| || || || || || | |||||| ||| |||||| Sbjct 143381 CCTTCCTTGTCTTGGATCTTCGCCTTAACATTGTCGATCGTATCGCTGCTTTCGACTTCG 143322 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| ||||||||||| || || |||||||| Sbjct 143321 AGAGTAATGGTCTTCCCAGTCAGAGTCTTCACAAAAATCTGCAT 143278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179620725290584