Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq59 105 8e-18 seq1624 104 3e-17 seq1843 84.2 3e-11 >seq59 Length=545433 Score = 105 bits (116), Expect = 8e-18 Identities = 330/502 (66%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||||| ||||||||||| || |||||||| | ||| || |||||| Sbjct 358863 GTATTCTCCGACCCGTTTCTCGAAGAAATTGGTCTTCCCCTGCAAAGAAATCAACTCCAT 358922 Query 125818 AAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 ||||||| || ||| | | | ||| || | || || | ||| | Sbjct 358923 CCAATCAAAAGGATTCGACGCATCGTACAACTTCCCGTATCCTAAAGCGCC--GAGTAAC 358980 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||||| ||| |||| ||||| | |||| || |||||| || | ||| Sbjct 358981 CGATCCGCAACGAACTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAGGGCG 359040 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || ||||| || ||| ||| || |||| || |||||||| | | |||||| | Sbjct 359041 CAGGGAAGCGCATCGCAGACGAATTCCCTCTCGATGTCCACGGCGTTCGACACGATCCCA 359100 Query 125996 TGAATGGTGTCCACCC-CAGGTCTATTGCGCA-AAGTCTTGAAGAGTTCCACGGCAAACT 126053 | || | ||| | | ||| | | || || ||| | || || ||| || | Sbjct 359101 CGGATCTTCTCCTCGCTCAGCT-TCGTGTTCAGAAGACCGTAAAGCAAACA-GGCGAAGT 359158 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||||| || ||||| | || || | ||| || |||||| |||||| ||||| | Sbjct 359159 CGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAGTCCAGGCATCA 359218 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| || ||||||| |||||| |||||||| || || ||||| || || || |||| Sbjct 359219 GACCGCGTTTCTTCAGCCAGAATATCGCACAGAAGCTTCCAGAGAAAAATATCCCTTCCA 359278 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAAACCACTTC 126232 | || || || || | | | ||||||||| || || || | | | ||| | Sbjct 359279 CGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCACCAT----CGATCCATCGC 359334 Query 126233 ATCGCCCACTGCGCCTTTTTCT 126254 |||||||| | ||||||||||| Sbjct 359335 ATCGCCCAATCCGCCTTTTTCT 359356 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||||||||| ||||| | || || | ||| || |||||| || ||| ||||| ||||| Sbjct 337942 GTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAATCCAGGCATCAGACC 337883 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || || || |||||||| |||||||| || || ||||| || || || ||||| || Sbjct 337882 ACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAATATCCCTTCCACGCA 337823 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAAACCACTTCATCG 126236 || || || | || | |||||| || || || || ||| | ||| ||||| Sbjct 337822 AGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACC----GTCGATCCATCGCATCG 337767 Query 126237 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 126296 |||| | |||||| || | | ||| || | |||| | || | ||| || | | Sbjct 337766 CCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAATAGACGAGTTT 337707 Query 126297 TTTCTGATGGATCTTTGATGTA 126318 | |||| | |||||||||||| Sbjct 337706 TCTCTGCGGAATCTTTGATGTA 337685 >seq1624 Length=1424072 Score = 104 bits (114), Expect = 3e-17 Identities = 146/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| |||||||||||||||||||| ||||| | |||||||| | ||| ||||| | Sbjct 146482 TCAAAACCATCCATCTCAGTCAAGAGCTGATTAAGAGTTTGTTCTCTTTCGTCATTACC- 146540 Query 10934 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGA 10991 | | | | ||||| | | || |||| || |||||||| ||||||| ||| |||| Sbjct 146541 -ACCTCCAATTCCCGCTCCTCTTTCTCTACCAACAGCGTCAATCTCATCGACGAATACGA 146599 Query 10992 TACACGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGAC 11049 |||| ||| |||||| || |||| ||| | ||| || || | ||||| | Sbjct 146600 TACAAGGTGCATTTTCTTTAGC--CTTCTTAAAAAGATCACGAACACGAGAAGCACCAAT 146657 Query 11050 ACCCACAAACATTTCCACAAA 11070 ||| ||||||||||| ||||| Sbjct 146658 ACCAACAAACATTTCTACAAA 146678 >seq1843 Length=672013 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934 || ||||||||||| || | || ||||| || || || || | |||||||| | | | Sbjct 455126 AATCCATCCATCTCTGTAAGAAGCTGATTTATCGTCTGCTCCCTCTCATCATTTCCTCCG 455185 Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 || | ||||| | ||||| | || |||||||| ||||| || ||||| ||||| | Sbjct 455186 CCAAGC--CCCGCTCCCCGTTGTCTCCCCACGGCGTCTATTTCGTCAATGAACACGATGC 455243 Query 10995 ACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACA 11050 |||| ||| | ||| || ||||| | ||| || |||||| ||||| ||| Sbjct 455244 ACGGTGCCTTGGTCTTC----GCCTTGTCAAACAAATCACGAACTCTCGACGCACCTACA 455299 Query 11051 CCCACAAACATTTCCACAAA 11070 || || || | ||||||||| Sbjct 455300 CCAACGAATAATTCCACAAA 455319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597336963702240