Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1364 111 2e-19 seq486 111 2e-19 seq1915 104 3e-17 seq841 95.1 1e-14 >seq1364 Length=85398 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | ||| | |||| ||| | || || ||||| || ||||| || || Sbjct 46551 ACCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGC 46492 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || || ||||| || ||||| || || ||||||||||| | ||| Sbjct 46491 GAGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGG 46432 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| ||| |||| | | | |||||| || || || Sbjct 46431 GATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAAC 46372 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| || || ||||| ||||| || ||||| |||||||| ||||| || Sbjct 46371 CTCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCTT 46321 >seq486 Length=444201 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||| || ||||| ||||| ||||||| ||| || | || || Sbjct 173415 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCC 173474 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||||||| || || || | ||||||||||| | ||| | | ||||| | | || Sbjct 173475 AACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTAT-CTTG 173533 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | ||||||| | | | | | | | ||||| ||| || || || | |||||||||||| Sbjct 173534 AATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTT 173593 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || |||||||| || || || ||||| Sbjct 173594 GCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| | | ||| | ||| | ||| ||| |||||||| ||||| || || Sbjct 170491 ACCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGC 170550 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || |||| |||||| || || ||||| | ||| |||||||| | || Sbjct 170551 CAATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGG 170610 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 42159 | | || |||||| ||| |||| |||| | | | | | || || ||||| | Sbjct 170611 GATACCTTCTTTGTCC-TGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTA 170669 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || ||||| || |||||||| || ||||||||||||||||| Sbjct 170670 CCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| ||||| | || | ||| | |||| |||||||| || |||||||| || Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || ||||| | || || | |||||| ||||| || || | | ||||||||||| || Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| | ||| | || | || | | | | ||||| || ||||| Sbjct 158859 ATTCCCTCCTTGT-CTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCAC 158801 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || |||||||| ||||| ||||| Sbjct 158800 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | ||| | || | ||| ||| || ||||| |||||||| || Sbjct 173624 ACCCCCTCTGAGTCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGC 173683 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || |||| |||||| || || || || | ||||||||||| | ||| Sbjct 173684 CAAAGTACGACCATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGG 173743 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| |||||| | | | | | | | ||||| ||| || | Sbjct 173744 GATACCTTCCTTAT-CTTGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAA 173802 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||| |||||||| || |||||||| || || || ||||| Sbjct 173803 CCTCTAACGTGATTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 173851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| ||||| | ||| | || | ||| ||| || ||||| ||||| || ||| Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || | ||||| ||||| || || | || |||||||| | ||| Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 42102 AC-GCTCTCCTTGTCCATGATTTTTTG---TTTGAGCGTCGCCACCGTGTCGCTCGATTC 42157 | ||| ||||| || ||| | |||| || | |||| | ||||| ||| || Sbjct 169472 ATAGCT-TCCTTATCT-TGAATCTTTGCCTTTACATTGTCG--ATGGTGTCAGACGACTC 169527 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||||||||| || |||||||| || || |||||||| Sbjct 169528 AACTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | | | ||| | || || ||| || ||||| || ||||| || || Sbjct 170263 ACCTCCTCTGAGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGC 170322 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || | ||||| || ||||| || | ||||||||||| | ||| Sbjct 170323 CAAAGTACGACCATCTTCCAATTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGG 170382 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| || | || || || | | | | ||||| ||| || | Sbjct 170383 GATACCTTCCTTGTCC-TGTATCTTAGTCTTTACATTGTCGATGGTGTCAGACGACTCAA 170441 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||||||||| || || ||||| || || |||||||| Sbjct 170442 CCTCTAAAGTGATGGTTTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 170490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||||| || |||||||| || || ||||| | || || Sbjct 159189 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCC 159130 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| || || || || | | ||||||||||| || | | ||||||||| | Sbjct 159129 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG 159070 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || ||| | | | | ||||| || || || || | ||||| || ||| Sbjct 159069 ATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGATAGTCTTG 159010 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || |||||||| ||||| ||||| Sbjct 159009 CCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 >seq1915 Length=652484 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || || | |||| ||| | || || || |||||||||||||||| Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||| | | || || || || |||||||| || || ||||||| |||||||| | || Sbjct 299621 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299680 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || |||| | ||| |||| | || | |||| ||||| || | ||| || Sbjct 299681 ATGCCTTCTTTGT-CTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTAC 299739 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || || |||||||| | ||||||||| || ||||||||| Sbjct 299740 TTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 299788 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || || | |||| ||| | || || || ||||| ||||||||||| Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||| | || || || || || || ||||| || || ||||||| || ||||| | || Sbjct 300077 AGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300136 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | || ||||| | || || || | |||| || || || | |||||| Sbjct 300137 ATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCACT 300196 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || || |||||||| | ||||||||| || ||||||||| Sbjct 300197 TCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 300244 >seq841 Length=1035533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| |||||||| || ||||| || || || | || || |||||||| || ||||| Sbjct 649964 CTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAA 650023 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||||| | ||| | | || |||||| ||| | || | || | Sbjct 650024 GATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCC-TGAATCTTGGCCTTCACGT 650082 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||| || ||||| || |||| ||||| || || |||||||| || || | Sbjct 650083 TATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCA 650142 Query 42196 CAAAGATTTGCATTTT 42211 ||||||| ||||| || Sbjct 650143 CAAAGATCTGCATGTT 650158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543197671523520