Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq486 114 1e-20 seq1364 107 2e-18 seq1915 87.8 2e-12 seq841 84.2 2e-11 >seq486 Length=444201 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||||||||| || ||| || || || | || ||||| | | Sbjct 173430 GACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCCAACTGCTTACCTGCA 173489 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| | |||||| ||||| || || |||||||| || || ||| ||||||| ||| Sbjct 173490 AAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATC-TTGAATTTTTGTCTTAAC 173548 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | |||||| ||||| | ||| | ||||| || || || || | Sbjct 173549 ATTG-TCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTTGCCGGTGAGCGTCT 173607 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 173608 TGACGAAAATCTGCAT 173623 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| ||| || |||||| || || | || || || | | Sbjct 173658 GACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTCTAACTGCTTGCCTGCA 173717 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| | |||||| ||||| || || |||||||| || || ||| |||||| ||| Sbjct 173718 AAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATC-TTGAATTTTTGCCTTAAC 173776 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | |||||| ||||| | ||| | ||||| ||||| || || | Sbjct 173777 ATTG-TCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAGTGAGCGTCT 173835 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 173836 TGACGAAAATCTGCAT 173851 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 138412 TGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGT 138471 |||| | | || || ||||| |||||||||||| || |||||| || || | ||| Sbjct 169832 TGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGC 169891 Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 || || | | |||| | ||| || ||||| || || |||||||| ||||| || | || Sbjct 169892 TTGCCTGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC-CTGTATCTT 169950 Query 138532 TGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 || |||| | || | |||||| | |||||| ||||| | || | ||||| ||||| Sbjct 169951 AGTCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGT 170010 Query 138591 CAGAGTTTTTACAAAAATCTGCAT 138614 || || || || ||||||||||| Sbjct 170011 GAGCGTCTTGACGAAAATCTGCAT 170034 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||| |||||| || ||| || || || | ||| || || | | Sbjct 170069 GACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGGCCATCTTCTAATTGCTTGCCTGCA 170128 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | || |||||||| || || |||||||| || || ||| |||||| |||| Sbjct 170129 AAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCCTTATCT-TGAATTTTTGCCTTAAC 170187 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | |||||| ||||| | || | ||||| ||||| || || || Sbjct 170188 ATTATCAATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTTCCAGTGAGGGTCTT 170247 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 170248 GACGAAAATCTGCAT 170262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | ||| | ||||| | || |||||||| |||||||| || Sbjct 158523 CCTCCTCTCAAACGAAGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 158464 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| | || || |||| | |||| | | ||| ||||| ||||| Sbjct 158463 AGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 158404 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || ||| | | || | ||||| | ||||||||| Sbjct 158403 ATTCCCTCCTTGTCTTGGATCTTAGCTTTCACATTATCAATTGTGTCCGAAGACTCCACC 158344 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||| || |||||||| ||||| |||||||| Sbjct 158343 TCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACAAAGATCTGCAT 158297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 138412 TGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGT 138471 |||| | | || || ||||| |||||||||||| || |||||| || || | ||| Sbjct 170288 TGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGC 170347 Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 || || | |||| | |||||| ||||| || || |||||||| ||||| || | || Sbjct 170348 TTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTC-CTGTATCTT 170406 Query 138532 TGT-TTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589 || |||| |||| || | |||||| | |||||| ||||| | || | ||||| || | Sbjct 170407 AGTCTTTACATTG-TCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGG 170465 Query 138590 TCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || || ||||| ||||| Sbjct 170466 TGAGTGTCTTGACGAAAATTTGCAT 170490 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || | |||| | | ||||| || ||||||||||||||| | Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||| || || | | |||| | || || ||||| || || Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||| |||| || || ||| | |||| ||| |||| || | |||||| | |||||| | Sbjct 169472 ATAGCTTCCTTATC-TTGAATCTTTGCCTTTACATTG-TCGATGGTGTCAGACGACTCAA 169529 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| || || || || || || ||||| ||||| Sbjct 169530 CTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||||| | | ||||| |||||||||||||||||| || ||||| || || | || Sbjct 170515 ATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCTTCTAACTG 170574 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || || | | | || | || || ||||| || || |||||||||||||| ||| ||| Sbjct 170575 CTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTC-CTGAATTT 170633 Query 138531 TTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589 | ||||||| | || | || || | || || ||||| | || | || || || | Sbjct 170634 TAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCCG 170693 Query 138590 TCAGAGTTTTTACAAAAATCTGCAT 138614 | || ||||||||||| || ||||| Sbjct 170694 TTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | ||| | ||| | | || |||||||| |||||||| || Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | || || || | | |||| | | ||| ||||| ||||| Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | |||| | | ||||| | ||||||| Sbjct 158859 ATTCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTGT-CAATTGTGTCCGATGACTCCA 158802 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || |||||||||||||| ||||| || |||||||| Sbjct 158801 CCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 138412 TGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGT 138471 |||| | | ||||| |||||||| ||||||||| || ||| || || || | ||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 || || | | |||| | || || ||||| || || || ||||| || || |||||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 138532 TGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 || | ||||| | | |||||| | | |||| ||||| | || | ||||| || || Sbjct 169724 GCCTTAACATTGT-CGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGT 169782 Query 138591 CAGAGTTTTTACAAAAATCTGCAT 138614 || || || || ||||||||||| Sbjct 169783 GAGTGTCTTGACGAAAATCTGCAT 169806 >seq1364 Length=85398 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | ||| | ||| | | || || ||||| |||||||||||| Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| ||||| || |||| |||| |||||||| ||||| || || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| ||| || | |||| || | ||||| | ||||| || Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTG-TCGATCGTGTCCGAGGACTCAAC 46372 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | |||||| || || || || || ||||| |||||||| Sbjct 46371 CTCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 46324 >seq1915 Length=652484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | || | ||| | | | || || || ||||||||||| || | Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAG-C 300075 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || | |||| ||||| ||||||||||| | | |||| || | |||||||| |||| Sbjct 300076 A-AGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAG 300134 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||||||||| || || |||| | | ||||| || | | |||| Sbjct 300135 GGATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCA 300194 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | |||| || || || |||| || ||||| ||||| ||||| Sbjct 300195 CTTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 >seq841 Length=1035533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||| || ||||| | ||||| ||||| || || || |||| Sbjct 649960 TTGACTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCAAGCTGCTTCCCGG 650019 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| | |||||| ||||| || || || ||||||||||| ||| | || | || Sbjct 650020 CGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTC-CTGAATCTTGGCCTTC 650078 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | || || | || || ||||||| || | ||| || || || || ||| Sbjct 650079 ACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTT 650138 Query 138598 TTTACAAAAATCTGCATG 138615 || ||||| ||||||||| Sbjct 650139 TTCACAAAGATCTGCATG 650156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248579092160