Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq486 123 2e-23 seq1915 95.1 9e-15 >seq486 Length=444201 Score = 123 bits (136), Expect = 2e-23 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || |||||||| |||||||| ||| | ||| || | |||||||| Sbjct 170515 ATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCG--GCCAATGTACGACCATCTTCTAAC 170572 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || ||||| || ||||||| || || ||||| || || ||||| ||||| |||| Sbjct 170573 TGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTCCTGAATT 170632 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 || |||| ||| | || || ||||| | |||||| ||||| || ||||| || || Sbjct 170633 TTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCC 170692 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| |||||||| Sbjct 170693 GTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 107 bits (118), Expect = 1e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14979 GGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCC 15038 ||| || |||||||| |||||||| ||| | | | | | ||||| ||||| ||||| Sbjct 170293 GGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCC 170352 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 ||| | ||||||||||| ||||| ||| || ||||||||||| || || | || Sbjct 170353 TGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTT 170412 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 |||| | || || || || || || ||||| || |||||||| || || || || Sbjct 170413 TACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGT 170472 Query 15159 TTTTACAAAAATTTGCATA 15177 || || |||||||||||| Sbjct 170473 CTTGACGAAAATTTGCATA 170491 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| | |||||| || || || ||||| ||||||||||| Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || || || || ||||| | ||||| | ||| |||||| ||| Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 ||||| |||||||| ||| || || ||| | || || || || | || || || Sbjct 158859 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTC-CGATGACTCCAC 158801 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| ||||| |||||||| ||||| || || ||||| Sbjct 158800 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | || | || ||||| || ||||| || |||||||| ||| Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| ||||| || ||||| | ||||| || || ||||| ||| Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||| || ||| ||||| ||| ||| | || || || || || || Sbjct 169472 ATAGCTTCCTTATCTTGAATCTTTGCCTTT-ACATTGTCGATGGTGTCAGACGACTCAAC 169530 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || |||||||| || || || || || || |||||||||||| Sbjct 169531 TTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCATA 169579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14979 GGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCC 15038 ||| || |||||||| |||||||| ||| | | | | | ||||| ||||| ||||| Sbjct 169837 GGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCC 169896 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 || | |||||||| || ||||| ||| || ||||||||||| || || | || Sbjct 169897 TGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTT 169956 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 ||| | || || || || || || ||||| || |||||||| || || || || Sbjct 169957 TACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGTGAGCGT 170016 Query 15159 TTTTACAAAAATTTGCATA 15177 || || ||||| |||||| Sbjct 170017 CTTGACGAAAATCTGCATA 170035 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| ||||||||||| ||||| || ||||||||||| || | | | | ||||| Sbjct 169142 ACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCTTCA 169201 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | ||||| | || || || ||| ||||| |||||||| Sbjct 169202 AGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGG 169261 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| ||||| | || || ||||| || || || | || ||||| || Sbjct 169262 ATCTTTGC-CTTTACGTTGTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTCTT 169320 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || ||||| |||||||| Sbjct 169321 TCCTGTCAAAGTCTTAACAAATATTTGCAT 169350 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||||||| | | | | | |||||||| || Sbjct 173649 TGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTCTAACTGC 173708 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | ||||||||||| ||||| ||| || |||||||| || |||||| Sbjct 173709 TTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTT 173768 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || || || ||||| || || ||||| || || Sbjct 173769 GCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAGTG 173828 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| ||||| Sbjct 173829 AGCGTCTTGACGAAAATCTGCAT 173851 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| | ||| || ||||| || ||||| ||||||||||| Sbjct 158523 CCTCCTCTCAAACGAAGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 158464 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || || || || || || | ||||| | ||| ||||| || Sbjct 158463 AGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 158404 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| || || ||| ||| | || || || || | || || Sbjct 158403 ATTCCCTCCTTGTCTTGGATCTTAGCTTTCACATTATCAATTGTGTCCGAAGACTCCACC 158344 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| ||||| || |||||||| ||||| || ||||| Sbjct 158343 TCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACAAAGATCTGCAT 158297 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || ||||| || ||||| || ||| | | | | | ||||||||||| Sbjct 170059 ATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGGCCATCTTCTAATTG 170118 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| || | ||||| || |||||||| ||| || |||||||| || |||||| Sbjct 170119 CTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTT 170178 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || || || ||||| || |||||||| || || Sbjct 170179 TGCCTTAACATTATCAATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTTCCAGT 170238 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || || ||||| |||||| Sbjct 170239 GAGGGTCTTGACGAAAATCTGCATA 170263 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || ||||| || |||||||| || | | | | | ||||| Sbjct 173415 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCC 173474 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || || || | ||||||||||| ||||| ||| || |||||||| || | Sbjct 173475 AACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGA 173534 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | || ||| | || || || || || || ||||| || |||||||| Sbjct 173535 ATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTTG 173594 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||| |||||| Sbjct 173595 CCGGTGAGCGTCTTGACGAAAATCTGCATA 173624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || |||||||| || ||||| ||| | | | | | ||||| || ||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | ||||| || || ||||| ||| || |||||||| || ||||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || || || ||||| || |||||||| || || Sbjct 169724 GCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTG 169783 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || || ||||| |||||| Sbjct 169784 AGTGTCTTGACGAAAATCTGCATA 169807 >seq1915 Length=652484 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || || | || | ||| ||||| || ||||| || ||||||||||| Sbjct 300245 CCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300304 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||||| | | || || | |||||| || || | || | | |||||||| || Sbjct 300305 AGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300364 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| || || |||| | | | | ||||| | ||||||| Sbjct 300365 ATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCTACT 300424 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| ||||| || |||| || ||||| ||||||||||| Sbjct 300425 TCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | || | ||| ||||| || ||||| || ||||||||||| Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||||| | | || || | |||||| || || | || | | |||||||| || Sbjct 300077 AGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300136 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| || || |||| | | | | ||||| | |||| || Sbjct 300137 ATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCACT 300196 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || || |||| || ||||| ||||||||||| Sbjct 300197 TCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | || | ||| ||||| || ||||| || ||||||||||| Sbjct 299789 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAA 299848 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||||| | || || | ||| || || || | || | | || ||||| || Sbjct 299849 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299908 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| || |||| | | | | |||| | ||||||| Sbjct 299909 ATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTACT 299968 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| || || || |||| || ||||| ||||||||||| Sbjct 299969 TCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 86.0 bits (94), Expect = 4e-12 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | || | ||| | || || ||||| || ||||||||||| Sbjct 300473 CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGCA 300532 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||||| | | || || | ||| || || || | |||| | |||||||| || Sbjct 300533 AGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAGGG 300592 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| || || |||||| | | | ||||| | ||| ||| Sbjct 300593 ATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTTACT 300652 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188 || || ||||| ||||| |||||| || ||||| || |||||| || || |||||| Sbjct 300653 TCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGC--ATCTGTAATAAA 300709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357382295466980