Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq486 127 2e-24 seq1253 86.0 6e-12 >seq486 Length=444201 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| || |||||||||||||||||||| ||| ||| |||||| ||| || | |||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| ||||||| || ||||| || || || ||||| ||||| || ||||||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | |||| |||||| | ||| || || | || | ||||| ||||| Sbjct 169724 GCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTG 169783 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||||||||| Sbjct 169784 AGTGTCTTGACGAAAATCTGCAT 169806 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | ||||| || ||||| || |||||||| | Sbjct 159207 CCACCACGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 159148 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| ||||| || ||||||| | |||||| |||||||| Sbjct 159147 AGGGTCCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGG 159088 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| ||| || | | || | ||||||| | ||| || Sbjct 159087 ATTCCCTCCTTGTCTTGGATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACC 159028 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||||||| ||||| || |||||||| Sbjct 159027 TCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 ||| | ||| | |||| ||| |||||||| ||||| ||||||||| ||| || ||| Sbjct 173636 TCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACC 173695 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| |||| ||| || || || ||||||| |||||||| || || || || || ||||| Sbjct 173696 ATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTT 173755 Query 127018 GTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 || ||| ||| ||| || | | |||| |||||| | ||| || || | || | Sbjct 173756 ATCT-TGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGA 173814 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || || || || ||||||||||| Sbjct 173815 TTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 173851 Score = 109 bits (120), Expect = 5e-19 Identities = 168/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 126878 TATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTG 126937 |||| | | ||||| || | || | ||||| || | || |||||||| ||||| ||| Sbjct 173388 TATAATACACCACCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTG 173447 Query 126938 TAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGA 126997 || || ||| |||||| ||| || | ||| || || || ||||||| |||||||| Sbjct 173448 TAGTCAGCCAAAGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGG 173507 Query 126998 TCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGT 127056 || || || || || ||||| || ||| ||| || ||| | | |||| |||||| | Sbjct 173508 TCTGGTGGGATACCTTCCTTATCT-TGAATTTTTGTCTTAACATTGTCGATGGTGTCAGA 173566 Query 127057 ACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || | || | ||||||||||| || || || || ||||||||||| Sbjct 173567 CGACTCAACCTCTAACGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || || | ||| | |||| || |||||||| ||||| ||||| ||| | Sbjct 169351 TCCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGC 169410 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| ||| || | || |||||||| ||||||| || ||||| || || || Sbjct 169411 CAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGG 169470 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || | ||||| || ||| | | ||| || | | |||| |||||| | ||| | Sbjct 169471 GATAGCTTCCTTATCT-TGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAA 169529 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||||||||| || || || || ||||| ||||| Sbjct 169530 CTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||||| ||||| || ||||| || |||||||| | | || ||| ||| || | ||| Sbjct 158500 ATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGTGTACGACCATCCTCCAACTG 158441 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 || || || ||||||| | |||||| || ||||| || ||||||||||| ||| || Sbjct 158440 CTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGATCTT 158381 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 || | | || | ||||||| | ||| || || | || | || || ||||| Sbjct 158380 AGCTTTCACATTATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTCTTACCGGT 158321 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| ||||| |||||||| Sbjct 158320 GAGAGTTTTCACAAAGATCTGCAT 158297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| || || |||||||| || ||||| ||| ||| || ||| ||| || | || Sbjct 170288 TGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGC 170347 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| ||||||| |||||||| || || || || || ||||||||| || || Sbjct 170348 TTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTA 170407 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | |||| |||||| | ||| || || | || | ||||||||||| Sbjct 170408 GTCTTTACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTG 170467 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||| ||||| Sbjct 170468 AGTGTCTTGACGAAAATTTGCAT 170490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||| || |||||||| | | || ||| ||| || | ||| || ||| Sbjct 158949 GTGGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCCAACTGCTTCCCA 158890 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| |||||||| || ||||||||||| || ||| ||| Sbjct 158889 GCAAAGATCAACCTCTGCTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATCTTCGCCTTC 158830 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||||| ||| || || | || | || || || |||||||| Sbjct 158829 ACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGTCAGAGTC 158770 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| || |||||||| Sbjct 158769 TTTACGAAGATCTGCAT 158753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| || || |||||||| || ||||| ||| ||| || ||| ||| || | || Sbjct 169832 TGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGC 169891 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || || ||||||| || ||||| || || || || || ||||||||| || || Sbjct 169892 TTGCCTGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTA 169951 Query 127031 TGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| | ||||| ||| |||||| | ||| || || | || | |||||||| || Sbjct 169952 GTCTTTACGTTGT-CGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGT 170010 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||||||||| Sbjct 170011 GAGCGTCTTGACGAAAATCTGCAT 170034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||||| || |||||||||||||| ||||| ||| ||| || ||| ||| || Sbjct 170509 CACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCTTC 170568 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || ||| || || || | |||||||| ||||| || || || || || || |||||| Sbjct 170569 TAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTCCTG 170628 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||||| || | | |||| || || | | || || || | || | || || Sbjct 170629 AATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTT 170688 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||||||||| || ||||| Sbjct 170689 TCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| ||||| |||||||| | | || || ||| || ||||| |||||| Sbjct 169154 GTAGATTCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCTTCAAGCTGCTTTCCA 169213 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||||| || || || ||||||||||| ||| || ||| Sbjct 169214 GCAAAGATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTT 169273 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| || | ||| || || | || | || || || |||| ||| Sbjct 169274 ACGTTG-TCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTCTTTCCTGTCAAAGT 169332 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 169333 CTTAACAAATATTTGCAT 169350 >seq1253 Length=111296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| ||||| |||||||| ||| || || ||| |||| |||||||||| Sbjct 79430 GTGGACTCTTTCTGAATGTTGTAATCTGCCAGAGTTCGCCCATCTTCTAACTGTTTTCCA 79371 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || |||||| || ||| ||||| || ||||| || || |||||| Sbjct 79370 GCAAAGATCAGTCTCTGTTGATCAGGGGGTATCCCTTCTTTGTCC 79326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475487557302720