Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq486 120 3e-22 seq1915 96.9 3e-15 >seq486 Length=444201 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||| | ||| ||||| || || || || ||||| || || || ||| | || | Sbjct 170501 AGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGA 170560 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || || || || ||||| ||||||||||||||||||| ||||| || |||||| Sbjct 170561 CCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCT 170620 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || |||| |||| |||| | | | || | || || ||||| || || || | || Sbjct 170621 TTGTCCTGAA-TTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATGT 170679 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || ||||| ||||||||||| ||||||||| Sbjct 170680 TATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCATC 170719 Score = 116 bits (128), Expect = 3e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || | || ||||| |||||||| || || ||| Sbjct 170261 ATACCTCCTCTGAGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCG 170320 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| || |||||| | ||||| || |||||||| || Sbjct 170321 GCCAAAGTACGACCATCTTCCAATTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGT 170380 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTT-TGTTTG-ATCGCTTCTACGGTGTCGGAAGACT 45288 || || ||||| || || || || || | ||| || | || | |||||| || |||| Sbjct 170381 GGGATACCTTCCTTGTCCTGTATCTTAGTCTTTACATTG--TCGATGGTGTCAGACGACT 170438 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | ||| | ||||||||||| || || || || ||||||||||| Sbjct 170439 CAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 170490 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||||||| ||||| || | ||||| ||||||||||| || || || |||| || Sbjct 169423 ATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATAGCTTCCTT 169482 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||| ||| || | || | |||||| || ||||| ||||| | ||| | Sbjct 169483 ATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAACTTCTAAAGTGAT 169542 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| || || || || ||||||||||| Sbjct 169543 GGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||| | ||| || || | || ||||| |||||||| || || ||| Sbjct 169805 ATACCCCCTCTGAGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCG 169864 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| || ||||| | ||||| ||||||||||| || Sbjct 169865 GCCAAAGTACGACCATCTTCCAATTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGT 169924 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || | | || || | || | || | |||||| || ||||| Sbjct 169925 GGGATACCTTCCTTGTCCTGTA-TCTTAGTCTTTACGTTGTCGATGGTGTCAGACGACTC 169983 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | |||||||| || || || || || ||||| ||||| Sbjct 169984 AACCTCTAAAGTGATGGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 170034 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||| | || || || || || || || ||||| ||||| || ||| | || | Sbjct 169589 AGCCTAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGA 169648 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| ||||| ||||| || || | ||||| ||||||||||| || || |||||||| Sbjct 169649 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCC 169708 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 |||||||| ||||| || | || | |||||| || |||| || || | ||| Sbjct 169709 TTATCTTGGATTTTCGCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTG 169768 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| || || || || ||||| ||||| Sbjct 169769 ATGGTTTTTCCGGTGAGTGTCTTGACGAAAATCTGCAT 169806 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||| | ||| ||||| || || || || || || || ||||| ||| | || Sbjct 170045 AGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGG 170104 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || ||||| || ||||| | ||||| ||||| ||||| || || || ||||| Sbjct 170105 CCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCC 170164 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||||||||||||| || | || | |||||| || ||||| || || | ||| Sbjct 170165 TTATCTTGAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACCTCTAAAGTG 170224 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || || || || ||||| ||||| Sbjct 170225 ATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || || ||||| | ||||| || |||||||| || || || ||||| || Sbjct 173468 ATCTTCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTT 173527 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 |||||||| ||||||| | | | | || | |||||| || ||||| || || | || | Sbjct 173528 ATCTTGAA-TTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGA 173586 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| || || || || ||||| ||||| Sbjct 173587 TGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || || |||||||||||||| || |||| ||| || | || ||| | Sbjct 158505 ACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAAT--CTGCAAGTGTACGACCATCCT 158448 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| || || || || | ||||| | |||||||| || || || || || || |||| Sbjct 158447 CCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTT 158388 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || || ||| | || | ||||| |||||||| || || | ||| | || | Sbjct 158387 GGATCTTAGCTTTCACATTATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTCT 158328 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| |||||||| ||||| || |||||| Sbjct 158327 TACCGGTGAGAGTTTTCACAAAGATCTGCATC 158296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || ||||| || || || || || || |||||| | || | ||| || Sbjct 173642 CACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTC 173701 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || ||||| | ||||| || |||||||| || || || ||||| |||||||| Sbjct 173702 TAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTG 173761 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||||| || | || | |||||| || ||||| || || | || | ||||| Sbjct 173762 AATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTT 173821 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || || || ||||| |||||| Sbjct 173822 GCCAGTGAGCGTCTTGACGAAAATCTGCATC 173852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||||||||| || ||||| | ||| | ||| ||||| || Sbjct 159184 ATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCCAACTG 159125 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| || | ||||| | |||||||| || || || || || || ||||| || || Sbjct 159124 CTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTT 159065 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | ||||| |||||||| || || || || | || ||||| || Sbjct 159064 CGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGATAGTCTTGCCAGT 159005 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| || || |||||| Sbjct 159004 CAGAGTCTTTACGAAGATCTGCATC 158980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||| |||||||||||||| | ||| | ||| ||| Sbjct 158733 ACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGACCATCCTCC 158674 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | ||||| | |||||||| || || || || || || |||||| Sbjct 158673 AACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGA 158614 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||||| || ||||| || || | ||| | || || Sbjct 158613 ATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTTA 158554 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| ||||| || || |||||| Sbjct 158553 CCAGTCAGAGTCTTTACGAAGATCTGCATC 158524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||||||||| || ||||| | ||| | ||| ||| Sbjct 158961 ACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCC 158902 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | ||||| | |||||||| || ||||| || || || |||||| Sbjct 158901 AACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGAATTCCCTCCTTGTCTTGA 158842 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||||| || ||||| || || | ||| | || || Sbjct 158841 ATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTTA 158782 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| ||||| || || |||||| Sbjct 158781 CCAGTCAGAGTCTTTACGAAGATCTGCATC 158752 >seq1915 Length=652484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || | || ||||| || || ||||| || || ||||| ||||| Sbjct 299558 ATTCCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCA 299617 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | | | ||| || | ||| || ||||| | || | || ||||||||| || Sbjct 299618 GAAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGG 299677 Query 45231 GGAATGCCTTCTTTATCTTGAATTTT-TTGTTT--GATCGCTTCTACGGTGTCGGAAGAC 45287 || ||||||||||| ||||||||||| | ||| ||| | || || || |||| Sbjct 299678 GGGATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCG---CAACCGTATCTGAAGTT 299734 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | ||||| || ||||| || | || ||||| ||||||||||| Sbjct 299735 TCTACTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| || || || || ||||| | | | | ||| || Sbjct 299807 ACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAAAGAATATGATCATCCTCA 299866 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || ||||| | || | || ||||||||| || || ||||||||||| |||||| Sbjct 299867 AGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGA 299926 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || || | ||| | || |||| || ||||| | ||||| || ||| Sbjct 299927 ATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTACTTCTAAAGTAATTGTCTTG 299986 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || ||||| ||||||||||| Sbjct 299987 CCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || ||||| || || ||||| || || || || ||||| Sbjct 300242 ATTCCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCA 300301 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | | ||| || | |||||| ||||| | || | || ||| ||||| || Sbjct 300302 GCAAGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGA 300361 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| |||||||| || || || | ||||| || |||| || Sbjct 300362 GGGATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCT 300421 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| |||||||| || | || ||||| ||||||||||| Sbjct 300422 ACTTCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990611710880