Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1843 89.7 6e-13 seq1624 86.0 8e-12 seq59 86.0 8e-12 >seq1843 Length=672013 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/201 (71%), Gaps = 12/201 (6%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||| ||||||||||| || | || ||||| || || || || | |||||||| | | Sbjct 455125 GAATCCATCCATCTCTGTAAGAAGCTGATTTATCGTCTGCTCCCTCTCATCATTTCCTCC 455184 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | || || |||| | ||||| | || |||||||| |||||||||||||| ||||| Sbjct 455185 GCCAAGCC--CCGCTCCCCGTTGTCTCCCCACGGCGTCTATTTCGTCAATGAACACGATG 455242 Query 12909 CACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGAC 12964 ||||| ||| | ||| || ||||| | ||| || |||||| ||||| || Sbjct 455243 CACGGTGCCTTGGTCTTC----GCCTTGTCAAACAAATCACGAACTCTCGACGCACCTAC 455298 Query 12965 ACCCACAAACATCTCCACAAA 12985 ||| || || | |||||||| Sbjct 455299 ACCAACGAATAATTCCACAAA 455319 >seq1624 Length=1424072 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||||||||||||||| ||||| | |||||||| | ||| ||||| | Sbjct 146482 TCAAAACCATCCATCTCAGTCAAGAGCTGATTAAGAGTTTGTTCTCTTTCGTCATTACC- 146540 Query 12849 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906 | | | | ||||| | | || |||| || |||||||| || || | ||| |||| Sbjct 146541 -ACCTCCAATTCCCGCTCCTCTTTCTCTACCAACAGCGTCAATCTCATCGACGAATACGA 146599 Query 12907 TACACGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGAC 12964 |||| ||| |||||| || |||| ||| | ||| || || | ||||| | Sbjct 146600 TACAAGGTGCATTTTCTTTAGC--CTTCTTAAAAAGATCACGAACACGAGAAGCACCAAT 146657 Query 12965 ACCCACAAACATCTCCACAAA 12985 ||| |||||||| || ||||| Sbjct 146658 ACCAACAAACATTTCTACAAA 146678 >seq59 Length=545433 Score = 86.0 bits (94), Expect = 8e-12 Identities = 177/262 (68%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||||||||| ||||| | || || | ||| || |||||| || || ||||| ||||| Sbjct 337942 GTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAATCCAGGCATCAGACC 337883 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || || || |||||||| |||||||| || |||||||| || ||||| ||||| || Sbjct 337882 ACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAATATCCCTTCCACGCA 337823 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG-CGGGACTTTGTATCAAACCACTTCATCG 127709 || || || | | | ||| || || || | | || | ||| | | ||||| Sbjct 337822 AGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCGATCCATCG----CATCG 337767 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 127769 |||| | ||||| || | | ||| || | |||| | || | ||| || | | Sbjct 337766 CCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAATAGACGAGTTT 337707 Query 127770 TTTCTGATGGATCTTTGATGTA 127791 | |||| | |||||||||||| Sbjct 337706 TCTCTGCGGAATCTTTGATGTA 337685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490113824480