Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq841 152 1e-31 seq486 131 4e-25 seq1364 129 1e-24 seq1915 96.9 8e-15 seq1253 93.3 1e-13 >seq841 Length=1035533 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| || | || |||||||| | || | |||||| Sbjct 649944 AGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCC 650003 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| | |||||||||||| || ||||||||| ||| Sbjct 650004 TCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCC 650063 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| || || | | ||| || || | ||||||||| Sbjct 650064 TGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTC 650123 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||||||||| || || Sbjct 650124 TTCCCCGTTAGGGTTTTCACAAAGATCTG 650152 >seq486 Length=444201 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || |||||||| | || || || ||||||| ||||||||| |||||||| | Sbjct 170273 AGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGA 170332 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| ||||| || |||||||| | |||||||||||| || || ||||| Sbjct 170333 CCATCTTCCAATTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCC 170392 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| || |||| |||||| | | || || || || ||| Sbjct 170393 TTGTCCTGTATCTTAGTCTTTACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTG 170452 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| || || || |||||||| Sbjct 170453 ATGGTTTTGCCGGTGAGTGTCTTGACGAAAATTTG 170487 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||| || || | |||||||||||||||||| | |||||| Sbjct 173412 AGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCT 173471 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| | |||||||||||| || || ||||| || Sbjct 173472 TCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCT 173531 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| ||| ||| || |||| |||||| | | || || || |||||||| || Sbjct 173532 TGAATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTT 173591 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || Sbjct 173592 TTGCCGGTGAGCGTCTTGACGAAAATCTG 173620 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || |||||||| || || ||||| || || | |||||| || |||||||| | Sbjct 173634 AGTCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGA 173693 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| | |||||| || || ||||| | |||||||||||| || || ||||| Sbjct 173694 CCATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCC 173753 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| ||| ||| || |||| |||||| | | || || || |||||| Sbjct 173754 TTATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTG 173813 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| || || || ||||| || Sbjct 173814 ATTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTG 173848 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| || |||||||||| |||||| || || | || | ||||| Sbjct 158508 AGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGTGTACGACCATCC 158449 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||| ||||| | | ||||||||| ||| ||||| || || Sbjct 158448 TCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCT 158389 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | ||||| | | || || || || ||||| ||| Sbjct 158388 TGGATCTTAGCTTTCACATTATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTC 158329 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||||||||||||||| || || Sbjct 158328 TTACCGGTGAGAGTTTTCACAAAGATCTG 158300 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || ||||| || |||||||||| |||||| || || | ||| Sbjct 159201 CGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTC 159142 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||||||||| ||||| | | ||||||||| ||| ||||| Sbjct 159141 CGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCC 159082 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||||| || | ||||| | | || || |||| Sbjct 159081 TCCTTGTCTTGGATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGT 159022 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || || || || Sbjct 159021 GTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTG 158984 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || |||||||| ||||||||||| | ||||||||||| |||||| | |||||| Sbjct 169449 ATCTTTGCTGGAAAGCAATTGGAAGATGGTCGTACTTTGGCCGACTACAACATTCAGAAA 169390 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| || || |||||||| Sbjct 169389 GAGTCCACCCTACACCTTGT 169370 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || |||||||| |||||||| | |||||||||||||||||| | |||||| Sbjct 173722 ATCTTTGCAGGCAAGCAGTTAGAAGATGGTCGTACTTTGGCCGATTACAACATTCAGAAA 173663 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| || || |||||||| Sbjct 173662 GAGTCCACGCTACACCTTGT 173643 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || || || || | |||||| || || | |||| |||||| Sbjct 169139 AGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCT 169198 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || ||||| | | ||||| || || ||||| || || Sbjct 169199 TCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCT 169258 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| || | ||| |||| || || || || | ||||| ||| Sbjct 169259 TGGATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTC 169318 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| ||||| Sbjct 169319 TTTCCTGTCAAAGTCTTAACAAATATTTG 169347 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||||||||| | |||||||| || |||||| | |||||| Sbjct 173494 ATCTTTGCAGGTAAGCAGTTGGAAGATGGTCGCACTTTGGCTGACTACAACATTCAGAAA 173435 Query 200998 GAGTCTACTCTTCAC 201012 ||||| ||||||||| Sbjct 173434 GAGTCCACTCTTCAC 173420 >seq1364 Length=85398 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| ||||| || ||||||| ||||||||| || | ||| | ||| || Sbjct 46535 AGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCC 46476 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||||||||| |||||||||||||| || || ||||| ||| Sbjct 46475 TCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCC 46416 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| ||||| | | || || || | || ||||| Sbjct 46415 TGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTAATCGTT 46356 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || |||||||| || || Sbjct 46355 TTCCCCGTAAGGGTCTTCACAAAGATCTG 46327 >seq1915 Length=652484 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||||||||| || || || | ||||| |||| | | | |||| Sbjct 299576 AGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAAAGAATATGATCATCC 299635 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || |||||||| | |||||||| || || |||||| || Sbjct 299636 TCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGGATGCCTTCTTTGTCT 299695 Query 199538 TGAATCTTTTGCTTCACGGATTCG--ACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||||| || ||| || ||||| || || |||| |||||||| ||||| || || | Sbjct 299696 TGAATTTTACTCTTTAC--ATTCGCAACCGTATCTGAAGTTTCTACTTCCAAAGTAATTG 299753 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| | || || || |||||||| Sbjct 299754 TCTTGCCCGTCAACGTCTTTACGAAAATTTG 299784 >seq1253 Length=111296 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || ||||| ||||| |||||||| | ||| |||| ||||||||| | || Sbjct 79359 ACTGATCTTTGCTGGAAAACAGTTAGAAGATGGGCGAACTCTGGCAGATTACAACATTCA 79418 Query 200994 GAAAGAGTCTACTCTTCACCTTGT 201017 ||||||||| |||||||||||||| Sbjct 79419 GAAAGAGTCCACTCTTCACCTTGT 79442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178887946209276