Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1364 129 7e-25 seq486 104 3e-17 seq841 100 3e-16 >seq1364 Length=85398 Score = 129 bits (142), Expect = 7e-25 Identities = 177/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | |||||||| | || || |||||||| |||||||||| Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| |||| || || ||||| |||||||| || | ||||||||||| | || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| |||||| ||||| | | | |||||| || || || Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACC 46371 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCACAAACA 46605 || | || || ||||| ||||| || || || |||||||| ||||| ||| | | |||| Sbjct 46370 TCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCTTTTCTCCAACA 46311 Query 46606 ACACGC 46611 |||||| Sbjct 46310 ACACGC 46305 >seq486 Length=444201 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | || ||||| | ||| ||||||||||| ||||| || | Sbjct 158523 CCTCCTCTCAAACGAAGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 158464 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || | |||||| ||||| || ||||| | ||||||||| | || Sbjct 158463 AGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 158404 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| || | | | | ||||| || ||||| Sbjct 158403 ATTCCCTCCTTGTCTTGGATCTTAGCTTTCACATTATCAATTGTGTCCGAAGACTCCACC 158344 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 158343 TCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACAAAGATCTGCAT 158297 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | || ||||| | ||| ||||||||||| ||||| || | Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || | |||||| || || || ||||| | ||||||||||| || Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||| | | | | ||||| || ||||| Sbjct 158859 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACC 158800 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || ||||| || || || ||||| ||||| Sbjct 158799 TCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | | ||| || || || || || |||||||| |||||||||| Sbjct 170264 CCTCCTCTGAGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCC 170323 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || | |||||||| ||||| ||||| ||||||||||| | || Sbjct 170324 AAAGTACGACCATCTTCCAATTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGGG 170383 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||||| |||| | | | | ||||| ||| || || Sbjct 170384 ATACCTTCCTTGTCCTGTATCTTAGTCTTTACATTGTCGATGGTGTCAGACGACTCAACC 170443 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| || || || || || || |||||||| Sbjct 170444 TCTAAAGTGATGGTTTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 170490 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||||| | ||| || | || || | |||||||| || || Sbjct 169844 TCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCCTGCAAAG 169903 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || |||||||| | || | | ||||||||| ||||| |||| | ||| Sbjct 169904 ATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTTTA-CGTT 169962 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||| || || || | |||||||||||||| || ||||| || || Sbjct 169963 GTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGTGAGCGTCTTGAC 170022 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 170023 GAAAATCTGCAT 170034 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||||||||||| ||||| || | || || || | || || Sbjct 159189 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCC 159130 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| ||||| || ||||| | ||||||||||| || | | ||||||||| | Sbjct 159129 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG 159070 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| || | | | | ||||| || || || |||| ||||| || ||| Sbjct 159069 ATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGATAGTCTTG 159010 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 159009 CCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||| | | ||| ||||| | || ||| ||||| || |||||||||| Sbjct 170492 CCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCC 170551 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||||||||| || |||||||| || |||||||| | ||| Sbjct 170552 AATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG 170611 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| || || | || | | | | || || ||||| || Sbjct 170612 ATACCTTCTTTGTCCTGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACC 170671 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 170672 TCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||| ||||||||||||| | |||||| | || || | ||| ||||| || || Sbjct 169615 CTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGTTTGCCAGCAAA 169674 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||| |||||||| | || | || ||||| || ||| ||| ||| | | Sbjct 169675 GATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTCGCCTTAACATT 169734 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | | || || || | ||||||||||| || || || || || || Sbjct 169735 GTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTGAGTGTCTTGAC 169794 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 169795 GAAAATCTGCAT 169806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||| | ||| || || | || ||| || || || |||||||||| Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || | ||||| || || || |||||||| |||||||| | || Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 46487 AC-GCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | ||| ||||| || ||||| ||| | | | | ||||| ||| || || Sbjct 169472 ATAGCT-TCCTTATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAAC 169530 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| || ||||| || || || |||||||| Sbjct 169531 TTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 >seq841 Length=1035533 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || ||| | ||||| || | || |||||| || ||||| ||||| | Sbjct 649929 CCTCCCCGTAGACGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGCA 649988 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 649989 AGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 650048 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| ||||| ||| | | | | ||| || ||||| || Sbjct 650049 ATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGACC 650108 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | ||||| || || ||||| || ||||| |||||||| ||||| || Sbjct 650109 TCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATGTT 650158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222658110560