Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1915 114 9e-21 seq1364 84.2 2e-11 seq486 84.2 2e-11 >seq1915 Length=652484 Score = 114 bits (126), Expect = 9e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| || ||||||| ||| | ||| |||||| || ||||| ||||| | Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | ||||| || | ||| || || |||| || | | ||||| || | ||| Sbjct 299621 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299680 Query 39613 ACGCCTTCTTTGTCGCATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| ||||| | |||| || |||| || || |||| |||| | Sbjct 299681 ATGCCTTCTTTGTCTTGAATTTTACTCTTTACAT--TCGCAACCGTATCTGAAGTTTCTA 299738 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||||||||| || ||||| || || |||||||| || ||||| Sbjct 299739 CTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || || ||||||| ||| | || |||||| || || || ||||| || Sbjct 300245 CCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300304 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || || ||||| || | |||||| || |||| || | | || || || | || Sbjct 300305 AGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300364 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || || |||| || || |||| |||| || Sbjct 300365 ATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCTACT 300424 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||||||||| ||||| || || |||||||| || ||||| Sbjct 300425 TCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| || ||||||| ||| | ||| |||||| || || || ||||| || Sbjct 300473 CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGCA 300532 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || || ||||| || | ||| || || |||| || | | || || || | || Sbjct 300533 AGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAGGG 300592 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| | || || | || || |||| || || |||| ||| | Sbjct 300593 ATGCCTTCTTTGTCTTGAATCTTACTCTTTACAT--TCGCAACGGTATCTGAAGTTTTTA 300650 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||||||||| | || || || |||||||| || ||||| Sbjct 300651 CTTCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| || | ||||| ||| | || |||||| || || || ||||| | Sbjct 299789 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAA 299848 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | ||||| || | ||| || || |||| || | | ||||| || | ||| Sbjct 299849 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299908 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| || || |||| || | |||| |||| || Sbjct 299909 ATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTACT 299968 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| || ||||| || || |||||||| || ||||| Sbjct 299969 TCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| || | ||||| ||| | || |||||| || || || ||||| || Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || ||| ||||| || | |||||| || |||| || | | || || || | || Sbjct 300077 AGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300136 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || || |||| || || |||| ||||||| Sbjct 300137 ATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCACT 300196 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || ||||| || ||||| || || |||||||| || ||||| Sbjct 300197 TCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 >seq1364 Length=85398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | || ||| || |||| ||| | || ||||||||| || || || ||||| Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| | || |||| ||| |||||| | || || | ||||||||| || | || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| || || || ||| || | | |||| | ||||| | | || | Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATC--GTGTCCGAGGACTCAA 46373 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||| ||||| ||||| | || || || ||||||||||| Sbjct 46372 CCTCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 46324 >seq486 Length=444201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||| || | |||| ||||| || || || || || ||| Sbjct 173397 CCACCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCC 173456 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| ||||| || || || |||| || ||||||||||| || | || Sbjct 173457 AAAGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGG 173516 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || |||||| ||| || |||| | ||||| | || | Sbjct 173517 ATACCTTCCTTATCTTGAATTTTTGTCTTAACATTGTCG--ATGGTGTCAGACGACTCAA 173574 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || ||||| || || | || || ||||| |||||||| Sbjct 173575 CCTCTAACGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||| || || | ||| | ||| ||| ||||| || || |||| Sbjct 158527 CATC-CCTCCTCTCAAACGAAGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAAT 158469 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || |||| ||||| || |||||| |||| || || | |||||| || | Sbjct 158468 CTGCAAGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 158409 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | || || ||||| || || ||| | | | | |||||| | | Sbjct 158408 GAGGGATTCCCTCCTTGTCTTGGATCTTAGCTTTCACATTATCAATTGTGTCCGAAGACT 158349 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || ||||| || || ||||| || | |||||| || ||||||||||| Sbjct 158348 CCACCTCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACAAAGATCTGCAT 158297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347360167612724