Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq704 149 8e-31 seq1624 120 4e-22 seq1843 91.5 2e-13 seq59 87.8 2e-12 seq1214 86.0 8e-12 >seq704 Length=333105 Score = 149 bits (164), Expect = 8e-31 Identities = 282/407 (69%), Gaps = 10/407 (2%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | || | |||| || || ||||| | ||||| || || || Sbjct 214058 TCAAAGCGTCCAGGCCTGAGTAAAGCGTTGTCTAGAATATCTGCACGATTTGTAGCAGCA 213999 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| | ||||| | |||||||||||||||||||||| |||||| |||| | Sbjct 213998 ACCACAATGACCCCTGTGTTTCCCTCAAAACCATCCATCTCTGTCAGAAGCTGATTAAGA 213939 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 16065 |||||||| ||||||||||| || | | | | |||| | | |||| | || || | Sbjct 213938 GTTTGTTCTCGTTCATCATT-GC-CCCCTCCAATTCCAGTTCCTCTTTGCCTACCAACAG 213881 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 16123 |||| |||||||||| || || ||||| || ||| || || |||| ||| || Sbjct 213880 CATCTATCTCATCAACAAACACAATGCAAGGAGCATTCTCCTTTGC--CTTCTTAAAAAG 213823 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 ||| || || || || || ||||||||||||||||| ||||| | | | ||| | Sbjct 213822 ATCACGGACCCGAGAAGCTCCAACACCAACAAACATCTCTACAAATTCAGATCCTGAA-A 213764 Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 ||| || || |||||| | |||||| ||||| ||| ||||| || || || || | Sbjct 213763 TTGAGAAAAAAGGGACACCTGCTTCACCGGCAATTGCTTTTGCGAGTAGTGTTTTCCCTG 213704 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 | || || ||| ||| || ||||| ||||| |||| ||| Sbjct 213703 TTCCAGGAGGACCAATGAGAAGAACACCTTTAGGAATGCTGGCACCA 213657 >seq1624 Length=1424072 Score = 120 bits (132), Expect = 4e-22 Identities = 204/290 (70%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||||||||| || || | || || || || || || || | ||||| || || Sbjct 146395 CGATCAAAGCGTCCGGGCCTTAGAAGAGCAGAGTCGAGAATGTCGGCACGATTTGTGGCA 146454 Query 15945 GCGATGACAACAATACCT--GTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || || || | || ||| ||||| | ||||||||||||||||| ||||| ||||| | Sbjct 146455 GCAATTACTATAACTCCTGGGTTTCCT--TCAAAACCATCCATCTCAGTCAAGAGCTGAT 146512 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 ||| ||||||||| | ||| ||||| | | | | | || || | | || | || Sbjct 146513 TAAGAGTTTGTTCTCTTTCGTCATTACC--ACCTCCAATTCCCGCTCCTCTTTCTCTACC 146570 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 16118 || || ||||||||||| | ||| ||||| || ||| |||||| ||| |||| | Sbjct 146571 AACAGCGTCAATCTCATCGACGAATACGATACAAGGTGCATTTTCTTTAGC--CTTCTTA 146628 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 || ||||| || ||||| || || | |||||||||||| || ||||| Sbjct 146629 AAAAGATCACGAACACGAGAAGCACCAATACCAACAAACATTTCTACAAA 146678 >seq1843 Length=672013 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/368 (66%), Gaps = 14/368 (4%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 16033 || |||||||||||||| | |||||| || || || || |||| |||||||| || | Sbjct 455126 AATCCATCCATCTCTGTAAGAAGCTGATTTATCGTCTGCTCCCTCTCATCATTTCCTCCG 455185 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | || || | ||||| | |||||||| || || || |||||||| |||||||| Sbjct 455186 CCAAGC-CCCGCTCCCCGTTGTCTCCCCACGGCGTCTATTTCGTCAATGAACACGATGCA 455244 Query 16094 TGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 || ||| | ||||| || ||||| | ||| || || | | || || || Sbjct 455245 CGGTGCCTTGGTCTTCGC------CTTGTCAAACAAATCACGAACTCTCGACGCACCTAC 455298 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 |||||| || | |||||||| | || || | ||| || ||| || || | || Sbjct 455299 ACCAACGAATAATTCCACAAATTCTGAAGCAGCGCATGAGAAGAATGGTACTCCTGCCTC 455358 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 || || | || | || || || ||||| || || || || || |||| ||| Sbjct 455359 CCCGGCCACAGCCCTTGCCAGCAGTGTCTTCCCGGTTCCCGGAGGTCCGACGAGAAGGCA 455418 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||| ||||| ||||| || ||| | || || | ||| | |||||||| Sbjct 455419 TCCTTTTGGGATCTTAGCGCCTAAAGCAGTGTACTTGTCGGGGTTCTTCAAGAAATCCAC 455478 Query 16328 AATCTCTT 16335 | ||||| Sbjct 455479 TACCTCTT 455486 >seq59 Length=545433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT-CGCGTTCCTTTGCTGAGCG 102184 || || ||||||||||| ||| ||| | ||| || || || ||||||||| | Sbjct 359354 AAAAAGGCGGATTGGGCGATGCGATGGATCGATG----GTGCGGAGTCTTTTGCTGAGAG 359299 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 | | || ||||| || || || || || || |||||||| |||||| || || | Sbjct 359298 GATTGTGGCTTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGCTTCTGTGCGATATT 359239 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||||| ||||| || ||||| ||||| || || |||||||||||| | || || | Sbjct 359238 CTGGCTGAAGAAACGCGGTCTGATGCCTGGACTGACCTTCTCCAACGAATTGATATCGAG 359179 Query 102305 TGACGAGGGACTCCAC 102320 ||||| || |||||| Sbjct 359178 AGACGAAGGCCTCCAC 359163 >seq1214 Length=1562992 Score = 86.0 bits (94), Expect = 8e-12 Identities = 195/285 (68%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 13721 GAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATC 13780 ||||||| | ||| | |||||||| | || ||| ||| || ||||||||||| || Sbjct 875835 GAATTACAGAGAGGCGTACGGACTTTACGCTTGCAACGGGATTCTCTTCAACCACGAGAG 875894 Query 13781 ACCGAGACGAGGTGCAGACTTT-GTGACCATGAAGATTACCGAGGGTATCAAACAAATCA 13839 || | ||||| | ||| ||| ||||| | ||| || ||| | | | | |||| Sbjct 875895 TCCACGCCGAGG-GGAGAATTTCGTGACGAGGAAAATCACCAGAGCTGTGGGAAGAATCC 875953 Query 13840 TGAAGGG--TGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGG 13897 || ||| || |||| | | || ||||| ||| | | ||| ||| |||||||| Sbjct 875954 AGATGGGATTGCAAAGTAAGTTGTT--CTTGGGGAACCTGACAGCGTCGAGGGATTGGGG 876011 Query 13898 TCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACG 13956 ||| |||||| || || || |||||| | ||||| || || || |||||| |||| Sbjct 876012 ATTCGCCGGGGACTACGTGGAGGCGATGTGGTTGATGCTACAGCAGGA-GAAGCCTGACG 876070 Query 13957 AATATGTAGTAGCAACGGGTGAGACCCATTCAGT-GAGGCGGTTC 14000 | ||||| || || || | |||| |||| | || |||| | ||| Sbjct 876071 ACTATGTGGTGGCGACTGAGGAGAGCCATACTGTGGAGGAGTTTC 876115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620725112324160