Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1805 147 3e-30 seq1716 116 4e-21 >seq1805 Length=698828 Score = 147 bits (162), Expect = 3e-30 Identities = 191/258 (74%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 154875 ATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACAT-TAGAC-AGATATGTA 154932 ||| | ||||| || || |||||||| |||| ||| || | | || ||||||| | Sbjct 161960 ATGGTAACATATCCCTCGACACATGGAGTATACGAAG--AAGGTATCGATGAGATATGCA 162017 Query 154933 AGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGG 154992 ||||| |||| |||||||||||||| || ||| | || |||||||| | || ||||||| Sbjct 162018 AGATCATTCACGACAATGGTGGTCAAGTCTATATGGACGGAGCAAACATGAACGCACAGG 162077 Query 154993 TAGGACTAGCAAAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAA 155051 | || | ||| || || | ||| || || ||||| || ||||| || | || ||| Sbjct 162078 TTGGTTTGACAAGCCCTGGTTA-TATCGGAGCCGATGTTTGCCATCTGAATCTTCACAAA 162136 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAA 155111 || ||||||||||| || || ||||||||||| || | ||||| |||||||| ||| Sbjct 162137 ACCTTCTGTATTCCTCACGGCGGTGGAGGTCCAGGTATGGGTCCGATAGGTGTTAAGAAA 162196 Query 155112 CATCTCACACCATTTGTA 155129 |||||| | || ||| || Sbjct 162197 CATCTCGCGCCGTTTTTA 162214 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/276 (68%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| || || ||||||||||||| || || ||||| || || ||| | || || || Sbjct 160427 CAAAGATTCGGCGTTCCTATGGGATACGGCGGACCTCACGCCGCGTTCCTCGCGACCTCA 160486 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGTGAAG 153885 | | || || ||| ||| || || | ||| | || ||||||| ||| | | Sbjct 160487 CAGGAATACAAACGAATGATGCCAGGACGGATTATTGG--AGTCAGTGTGGATTCCGCCG 160544 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || || | | ||| | ||||| |||| || || ||| | |||| ||||| Sbjct 160545 GAAAACCGGCGCTTCGTATGGCAATGCAGACCCGAGAACAACACATCCGAAGAGGCAAAG 160604 Query 153946 CAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAG 154005 | ||||| ||||| ||||||||||||||| | || || || ||||||| | | || | Sbjct 160605 CTACCAGCAACATATGCACAGCTCAGGCATTACTTGCGAACATGTCTGCGATGTTCGCCG 160664 Query 154006 CATATCATGGTGCAGATGGACTACATGCTATAGCAA 154041 |||||| ||| | | || || | | |||||||| Sbjct 160665 TATATCACGGTCCCGGAGGTCTCAAAGATATAGCAA 160700 >seq1716 Length=724291 Score = 116 bits (128), Expect = 4e-21 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 372874 CAAAGGTTTGGTGTTCCTATGGGATATGGCGGTCCTCATGCTGCATTCCTTGCAACCTCA 372933 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGTGAAG 153885 | |||||||||| | || || || || ||| | || | ||| | ||| | Sbjct 372934 CAGGAGTATAAGAGGATAATGCCGGGAAGGATTATCGGGATTAGT--ATGGATTCCTCTG 372991 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || ||| | | || | ||||| ||||| || ||||| | || || |||| Sbjct 372992 GAAAACCGGCACTTCGCATGGCTATGCAGACAAGAGAACAACATATTCGCAGGGATAAAG 373051 Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972 ||||||| |||||||| || ||||||| Sbjct 373052 CAACCAGCAACATCTGTACGGCTCAGG 373078 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 154990 AGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATA 155049 |||| || || ||| ||| || | ||| |||||||| || ||||| || | || | Sbjct 374963 AGGTCGGTTTAACAAGCCCAGGTTATATTGGAGCAGATGTCTGCCATCTTAATCTTCACA 375022 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAA 155109 ||||||| |||||||| ||||||||||| ||||||||| | || || || ||||| || Sbjct 375023 AAACATTTTGTATTCCTCATGGAGGTGGGGGTCCTGGCATGGGACCCATTGGTGTCAAAA 375082 Query 155110 AACATCTCACACCAT 155124 |||| | |||||| Sbjct 375083 AACACTTGGCACCAT 375097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579196668923520