Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1805 140 4e-28 seq1716 107 2e-18 >seq1805 Length=698828 Score = 140 bits (154), Expect = 4e-28 Identities = 186/256 (73%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG 159609 ||| | |||||||| || |||||||| |||| ||| | ||| ||||||| ||| Sbjct 161960 ATGGTAACATATCCCTCGACACATGGAGTATACGAAGAAGGTATCGATGAGATATGCAAG 162019 Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 || |||| || ||||||||||| || ||| | || || ||||| | || |||||||| Sbjct 162020 ATCATTCACGACAATGGTGGTCAAGTCTATATGGACGGAGCAAACATGAACGCACAGGTT 162079 Query 159670 GGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGAC 159728 ||| | ||| || || | ||| || || ||||| || ||||| || | || || || Sbjct 162080 GGTTTGACAAGCCCTGGTTA-TATCGGAGCCGATGTTTGCCATCTGAATCTTCACAAAAC 162138 Query 159729 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACA 159788 ||||||||||| || || ||||||||||| || | ||||| || ||||| ||||| Sbjct 162139 CTTCTGTATTCCTCACGGCGGTGGAGGTCCAGGTATGGGTCCGATAGGTGTTAAGAAACA 162198 Query 159789 TCTCACACCATTTGTA 159804 |||| | || ||| || Sbjct 162199 TCTCGCGCCGTTTTTA 162214 >seq1716 Length=724291 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| ||||||||||||| || |||||||||||||||||| ||||||| || Sbjct 372874 CAAAGGTTTGGTGTTCCTATGGGATATGGCGGTCCTCATGCTGCATTCCTTGCAACCTCA 372933 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGCGAAG 158560 | |||||||||| | || || || || ||| | || | ||| | ||| | | Sbjct 372934 CAGGAGTATAAGAGGATAATGCCGGGAAGGATTATCGGGATTAGT--ATGGATTCCTCTG 372991 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | || | ||||| ||||| || ||||| | || || |||| Sbjct 372992 GAAAACCGGCACTTCGCATGGCTATGCAGACAAGAGAACAACATATTCGCAGGGATAAAG 373051 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 ||||||| |||||||| || || || Sbjct 373052 CAACCAGCAACATCTGTACGGCTCA 373076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 |||| ||| || ||| ||| || | ||| |||||||| || ||||| || | || | Sbjct 374963 AGGTCGGTTTAACAAGCCCAGGTTATATTGGAGCAGATGTCTGCCATCTTAATCTTCACA 375022 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAA 159784 | ||||| |||||||| ||||||||||| ||||||||| | || || |||||||| || Sbjct 375023 AAACATTTTGTATTCCTCATGGAGGTGGGGGTCCTGGCATGGGACCCATTGGTGTCAAAA 375082 Query 159785 AACATCTCACACCAT 159799 |||| | |||||| Sbjct 375083 AACACTTGGCACCAT 375097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588034822774080