Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1364 104 2e-17 seq841 98.7 6e-16 seq486 95.1 8e-15 >seq1364 Length=85398 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | | ||||| || | || |||||| || ||||| ||||| | Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| | || ||||| || || ||||| || || || || ||||||||| | || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| ||||| | |||| || || |||||| Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACC 46371 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || || ||||| ||||| || |||||||||||||||||||| || Sbjct 46370 TCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCTT 46321 >seq841 Length=1035533 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||||| | | | ||||| ||||| || || |||||||| |||||||| | Sbjct 649928 TCCTCCCCGTAGACGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGC 649987 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | ||| |||| || ||||| || ||||| || || | || ||||||||| | || Sbjct 649988 AAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGG 650047 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | || || ||||| |||||| || ||| ||||||| | ||| | | Sbjct 650048 GATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGT----TATCGATCGTATCCGAAGATT 650103 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || |||| ||| || || || ||||| || || ||||||||||||||||| || Sbjct 650104 CGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATGTT 650158 >seq486 Length=444201 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||| | |||| |||| ||| ||||| || ||||| || | | Sbjct 158751 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCAGCA 158692 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||| ||| || |||||||| || | | |||||||| | || Sbjct 158691 AGGGTACGACCATCCTCCAACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGG 158632 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | ||||||||||| ||||||| || || || | || || | ||| | ||| Sbjct 158631 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCAC--AT--TGTCAATTGTGTCCGATGACTC 158576 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||| || || || |||||||| || ||||||||||| Sbjct 158575 CACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158525 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||||| || ||||||||||||||| || |||| |||| | || |||| || Sbjct 169142 ACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCTTCA 169201 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || | | |||||| || | || | ||||||||||| Sbjct 169202 AGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGG 169261 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | |||||| || | || ||||| ||| Sbjct 169262 ATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTCTTT 169321 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||| ||||| || ||||| Sbjct 169322 CCTGTCAAAGTCTTAACAAATATTTGCAT 169350 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCAT 34830 |||||||||| ||| |||||||||||||| ||||| | |||| | || |||| | Sbjct 173415 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAG--TGCGACCATCTT 173472 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 ||| ||| || || ||||| || | || ||||||||| | || | || ||||| || Sbjct 173473 CCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTT 173532 Query 34891 TAATCTTCTGT-TTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTAT 34945 ||| || ||| || || || | ||||| ||| | |||||| || | || || Sbjct 173533 GAAT-TTTTGTCTTAAC--AT--TGTCGATGGTGTCAGACGACTCAACCTCTAACGTGAT 173587 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || ||||| ||||| || || ||||||||| Sbjct 173588 GGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCATA 173624 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || ||| || || ||||| || || | |||| | || |||| ||| Sbjct 159189 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCC 159130 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||||||||| || | | |||||||| | || | ||||||||||| Sbjct 159129 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG 159070 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 |||||| ||| || || |||| || | ||| | |||||| || | || || || Sbjct 159069 ATCTTCGCTTTCAC--AT--TATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGATAGT 159014 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| || ||||||||||| Sbjct 159013 CTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||| ||||| | | | || |||| || | ||| || || |||||| Sbjct 170528 TCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCTTCTAACTGCTTGCCTGCAAAT 170587 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||||| |||| | || || ||||| ||| || ||| || || Sbjct 170588 ATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTCCTGAATTTTAGTTTTAAC--AT 170645 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| | || || || | |||||||| |||||||| || || || Sbjct 170646 --TATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTT 170703 Query 34967 CACAAAGATCTGCAT 34981 |||||||| ||||| Sbjct 170704 TACAAAGATTTGCAT 170718 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||| | |||| |||| ||| || || ||||| || || | | Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||| ||| || || ||||| || | | |||||||| | || Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | ||||||||||| ||||||| || || || | || || | ||| | ||| Sbjct 158859 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCAC--AT--TGTCAATTGTGTCCGATGACTC 158804 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||| || || || |||||||| || ||||||||||| Sbjct 158803 CACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| || || | ||| | || |||| |||| ||| || |||||||| Sbjct 158488 TTCCTTTTGGATGTTGTAATCTGCAAGTGTACGACCATCCTCCAACTGCTTCCCGGCAAA 158429 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | ||||||||||| ||||| ||| || | Sbjct 158428 GATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCTTTCAC--A 158371 Query 34910 TGCTATCGATTCA--CCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| ||| ||| | ||| || || | || ||||| || || |||||||| | Sbjct 158370 T--TATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTCTTACCGGTGAGAGTTT 158313 Query 34966 TCACAAAGATCTGCAT 34981 |||||||||||||||| Sbjct 158312 TCACAAAGATCTGCAT 158297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624784980384