Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq59 214 2e-50 seq2201 134 2e-26 >seq59 Length=545433 Score = 214 bits (236), Expect = 2e-50 Identities = 399/585 (68%), Gaps = 6/585 (1%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| || |||||||| || || || |||||||| ||||||||| || || || || Sbjct 337960 CAAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 337901 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 || ||||||||||| || | |||||||||||||||||| | | || |||||| || Sbjct 337900 CAATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAA 337841 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 ||||| ||||| || ||||| || || | || || | || | || | Sbjct 337840 AAATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAA---GACTCCGCACC 337784 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | |||||| || |||||||| ||||||||||||||||| || || ||||| | | Sbjct 337783 GTCGATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGC 337724 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 | ||||||| | ||| | | |||||| | || || | | | |||||| Sbjct 337723 GTGAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTA 337664 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||| || |||||||| || || ||||| |||||||||||||| || | |||||||| Sbjct 337663 CATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGA 337604 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 | ||| || || | |||| || ||| ||| ||| || || ||||| || Sbjct 337603 GACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGC 337544 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA---TT 19433 ||||| || || | || || |||| ||||| || | ||| | ||| | Sbjct 337543 CGCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTC 337484 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| | | |||||| ||| | |||||| || || | ||||| ||||| ||||| || Sbjct 337483 CCAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGC 337424 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 ||| || ||||| | |||||| || |||| | || ||||| || Sbjct 337423 TTTCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 125 bits (138), Expect = 8e-24 Identities = 384/587 (65%), Gaps = 10/587 (2%) Strand=Plus/Plus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| || || || || || || || |||||||| ||||||||| || || || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | ||||||||||| || | ||| || | ||||||||| | | || |||||| || Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCGCACAGAAGCTTCCAGAGAA 359264 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 ||||| ||||| || |||||||| || | || || || | || || | Sbjct 359265 AAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAA---AGACTCCGCACC 359321 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 || |||||| || |||||||| ||||| || || || || || || ||||| | | Sbjct 359322 ATCGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGC 359381 Query 19197 ATTAAATAGATACATACGCTCATCTG-TATCTTTAACATATGCATCTATCAATAAACTGT 19255 | || ||| | ||| | || | ||||| | || || | | | ||||| Sbjct 359382 GTGGAAGAGACGAGTTTTCTC-TGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGT 359440 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 |||| |||||||| || || || ||||| ||||||||||| || || | ||| || | Sbjct 359441 ACATCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCG 359500 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | ||| || || | |||| || ||| ||| || ||| || || || | Sbjct 359501 AGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATG 359560 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TGTAT 19432 | ||||| || || | || || |||| || || || | || | ||| ||| | Sbjct 359561 CCGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGT-TGTCGGTAAGGGTGTGT 359619 Query 19433 T-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | ||| | | |||| | || | ||| || ||||| | |||||||| || || || Sbjct 359620 TCCCAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTCA 359679 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 ||||| |||||||| | ||||| || |||| | || ||||| || Sbjct 359680 GCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | |||||| | || | |||||||||||||| ||||| ||| Sbjct 456660 CCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAACAATGCCA 456601 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | |||||||| || |||||||| ||| | || | |||||| | ||| Sbjct 456600 TTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATGCACAGAA 456541 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | |||||| || ||||| ||| |||| ||||||| |||||| || ||||| ||| Sbjct 456540 ACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTCATATATT 456481 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || ||||| |||||| |||| | || ||||||||| Sbjct 456480 CCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093145269920