Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq486 147 2e-30 seq1915 134 1e-26 seq1364 131 1e-25 seq841 107 2e-18 >seq486 Length=444201 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| ||||| | || | || ||||| || ||||| || || ||||| |||| Sbjct 169350 TTCCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGG 169409 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | |||| ||||||||||| || ||||| ||||| || || || || || | Sbjct 169410 CCAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTG 169469 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||| ||||||||||| ||| |||||| | || | |||||||||| || | Sbjct 169470 GGATAGCTTCCTTATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAA 169529 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| ||||||||||| | || || || || || ||||| Sbjct 169530 CTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || ||||| || || ||||| || || | ||| | |||| ||| Sbjct 173415 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCC 173474 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||||||||| ||||||||||| || || || || || ||||| ||||||||| Sbjct 173475 AACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGA 173534 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| || ||| | || | |||||||||| || || || | |||| |||||| Sbjct 173535 ATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTTG 173594 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || |||||||| Sbjct 173595 CCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||||||||| | ||| | |||| || || ||| Sbjct 173649 TGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTCTAACTGC 173708 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| ||||||||||| || || || || || ||||| ||||||||||||||| Sbjct 173709 TTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTT 173768 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||||| || || || | |||| |||||||| || Sbjct 173769 GCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAGTG 173828 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 173829 AGCGTCTTGACGAAAATCTGCAT 173851 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | | || | ||| || || || ||||| || || || || ||||| Sbjct 170036 CCCCCTCTTAGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCC 170095 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || |||||||| |||||||| ||||| || ||||| || || || Sbjct 170096 AAAGTCCGGCCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGG 170155 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| || ||| | || | |||||||||| || || Sbjct 170156 ATACCTTCCTTATCTTGAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACC 170215 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || || | || || || || |||||||| Sbjct 170216 TCTAAAGTGATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| ||||||||||| || ||||| ||||| | ||| | |||| ||||||||||| || Sbjct 170293 GGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCC 170352 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 ||| || ||||||||||| || || || || || ||||| || || || || || || Sbjct 170353 TGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTT 170412 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 |||| | || | |||||||||| || || || | ||||| ||||||||||| | || Sbjct 170413 TACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGT 170472 Query 101452 TTTTACAAATATCTGCAT 101469 || || || || ||||| Sbjct 170473 CTTGACGAAAATTTGCAT 170490 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | | || | ||| ||||| || |||||||| || ||||| ||||| Sbjct 170492 CCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCC 170551 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || || ||||| |||||||||||||| || || || || ||||| Sbjct 170552 AATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG 170611 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| || |||||||| ||| ||| | || | || ||||| | ||| || Sbjct 170612 ATACCTTCTTTGTCCTGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACC 170671 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || |||| ||||||||||| || ||||| Sbjct 170672 TCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| ||||||||||| || ||||| ||||| | ||| | |||| ||||||||||| || Sbjct 169837 GGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCC 169896 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||| |||||||| || || || || || || ||||| || || || || || || Sbjct 169897 TGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTT 169956 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | |||||||||| || || || | ||||| |||||||| || | || Sbjct 169957 TACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGTGAGCGT 170016 Query 101452 TTTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 170017 CTTGACGAAAATCTGCAT 170034 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||||| ||||| ||||||||||||||||| || || |||||||| || Sbjct 169124 CCTCCACGGAGACGTAGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCA 169183 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || ||||| ||||| | || ||||| || || Sbjct 169184 AGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGG 169243 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || ||| ||||| | || | || || || | || || Sbjct 169244 ATTCCCTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACC 169303 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || ||||| || |||||||| ||||| Sbjct 169304 TCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAACAAATATTTGCAT 169350 >seq1915 Length=652484 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || || | || | ||| | || |||||||| || || |||||||| | Sbjct 300471 TTCCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAG 300530 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | | | | |||| || | ||||||||||||||| |||| | ||||| || || | Sbjct 300531 CAAGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAG 300590 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||| |||||||| || |||||| | | || || || || |||| | Sbjct 300591 GGATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTTA 300650 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | |||||| | || || || ||||| ||||| ||||| Sbjct 300651 CTTCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || || | || | ||| || || |||||||| || ||||||||||| | Sbjct 299559 TTCCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAG 299618 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | | |||| || | ||||||||||||||| || | | || || || || | Sbjct 299619 AAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGG 299678 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||| ||||||||||| |||||| | | || || || || ||||| | Sbjct 299679 GGATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTA 299738 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | || ||||| || || || ||||| || || ||||| Sbjct 299739 CTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | || | || | ||| ||||| |||||||| || || |||||||| | Sbjct 300243 TTCCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAG 300302 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | | | | |||| || | ||| ||||||||||| || | | ||||| || || | Sbjct 300303 CAAGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAG 300362 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| |||||||| || |||| | | | || || || || ||||| | Sbjct 300363 GGATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCTA 300422 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | |||||||| || || || ||||| || || ||||| Sbjct 300423 CTTCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || || | || | ||| ||||| |||||||| || || |||||||| | Sbjct 299787 TTCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAG 299846 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | | |||| || | ||||||||||||||| || | | || || || || | Sbjct 299847 AAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGG 299906 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||| ||||||||||| |||| | | | || | || || ||||| | Sbjct 299907 GGATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTA 299966 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | || ||||| || || || ||||| || || ||||| Sbjct 299967 CTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || || | || | ||| ||||| |||||||| || || |||||||| | Sbjct 300015 TTCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAG 300074 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | | | | |||| || | ||| ||||||||||| || | | ||||| || || | Sbjct 300075 CAAGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAG 300134 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| ||| |||| || |||| | | | || || || || ||||||| Sbjct 300135 GGATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCA 300194 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || | || ||||| || || || ||||| || || ||||| Sbjct 300195 CTTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 >seq1364 Length=85398 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | ||| | ||| || || ||||||||||| || ||||| |||||| Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || |||| |||||| || || || || | |||||| || || || || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || ||| || ||| | || | ||||| || | || || Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACC 46371 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | |||||| || || | || || ||||| |||||||| Sbjct 46370 TCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 46324 >seq841 Length=1035533 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | || ||| | ||| | ||||| || || || || || ||||| || || || Sbjct 649928 TCCTCCCCGTAGACGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGC 649987 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | |||| || | ||||| || || || ||||||||||| || || || || Sbjct 649988 AAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGG 650047 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || |||||||| || ||||| || || || | || | || || || | ||| || Sbjct 650048 GATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGAC 650107 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || |||| ||| || || |||| ||||| ||||| ||||||||| || Sbjct 650108 CTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATGTTT 650159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267639555396