Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1915 107 1e-18 seq486 104 2e-17 seq1364 96.9 3e-15 >seq1915 Length=652484 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || | ||| | |||| ||| || || ||||| ||||||||||||||||| Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | |||| || || | |||||||| ||||| || |||| || || || | ||| Sbjct 299621 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299680 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| ||| || |||||| | || | ||||| | || || Sbjct 299681 ATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTACT 299740 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || |||||||| || ||||| ||||| ||||| Sbjct 299741 TCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||||| ||||| ||||||||||| ||| | |||| || || Sbjct 299807 ACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAAAGAATATGATCATCCTCA 299866 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||| ||||| || |||| || || || | ||| | ||| || ||||| | Sbjct 299867 AGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGA 299926 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || |||| | | || ||||| | || || || | ||||| || || Sbjct 299927 ATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTACTTCTAAAGTAATTGTCTTG 299986 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || ||||| ||||| ||||| Sbjct 299987 CCCGTCAATGTCTTTACGAAAATTTGCAT 300015 >seq486 Length=444201 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||||| | ||| | |||||| ||| |||||||||||| ||||| || | Sbjct 170492 CCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCC 170551 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || |||||||| || |||||||||| ||| || || || | || Sbjct 170552 AATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG 170611 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || || ||||| || | ||| ||||| ||| | | | | || || | || || Sbjct 170612 ATACCTTCTTTGTC-CTGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTAC 170670 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || |||||||| | ||||||||||| || |||||| Sbjct 170671 CTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCATC 170719 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| |||||| ||||| ||||| |||| | | | ||| | || ||| Sbjct 173415 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCC 173474 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||||||||| ||||| |||| ||||| || || | || | || ||||| || | Sbjct 173475 AACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGA 173534 Query 48678 ATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || |||||| || ||| | | | || |||| ||| ||||| | ||| || ||||| Sbjct 173535 AT-TTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTT 173593 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || ||||||||||| Sbjct 173594 GCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || || ||||| || |||||||| | || | ||| | || ||| Sbjct 159189 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCC 159130 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| |||||||| |||| | ||| || || | || | ||||||||||| Sbjct 159129 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG 159070 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | | || || | ||| ||||||| || || || || Sbjct 159069 ATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGATAGTCTTG 159010 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||| ||| ||||| || ||||||||| Sbjct 159009 CCAGTCAGAGTCTTTACGAAGATCTGCATC 158980 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||| | ||||||||| |||||| ||||| |||||||| | Sbjct 173625 CCCCCTCTGAGTCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCC 173684 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || || |||||||| || ||||| |||| ||||| || || | || Sbjct 173685 AAAGTACGACCATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGG 173744 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| ||| || ||| | | | || |||| ||| ||| Sbjct 173745 ATACCTTCCTTATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACC 173804 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||| || ||||| || || | || || || |||||||||||| Sbjct 173805 TCTAACGTGATTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCATC 173852 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 |||||| || || ||||| || |||||||| | || | ||| | || |||||||| Sbjct 158500 ATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGTGTACGACCATCCTCCAACTG 158441 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| |||||||| |||| | ||| || || | || | ||||||||||| ||||| Sbjct 158440 CTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGATCTT 158381 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | | | || || | ||||||||| | || || || || || || Sbjct 158380 AGCTTTCACATTATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTCTTACCGGT 158321 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | |||||| ||||| ||||||||| Sbjct 158320 GAGAGTTTTCACAAAGATCTGCATC 158296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || || || ||||| ||||||| || | ||| | || |||||||| Sbjct 158728 ATGAAGTGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGACCATCCTCCAACTG 158669 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| |||||||| |||| | ||| || || | || | ||||||||||| |||||| Sbjct 158668 CTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGAATCTT 158609 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || | ||||||||| | || || || || || || Sbjct 158608 CGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGT 158549 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 || ||| ||||| || ||||||||| Sbjct 158548 CAGAGTCTTTACGAAGATCTGCATC 158524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || ||||| || |||||||| | || | ||| | || |||||||| Sbjct 158956 ATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCCAACTG 158897 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| |||| | ||| || || | |||| ||||||||||| |||||| Sbjct 158896 CTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATCTT 158837 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || | ||||||||| | || || || || || || Sbjct 158836 CGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGT 158777 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 || ||| ||||| || ||||||||| Sbjct 158776 CAGAGTCTTTACGAAGATCTGCATC 158752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||||| | ||| | |||||| ||| |||||| ||||| || || || | Sbjct 170036 CCCCCTCTTAGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCC 170095 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || || ||||| || ||||| |||| || ||||| || | || Sbjct 170096 AAAGTCCGGCCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGG 170155 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| ||| || ||| | | | | || |||| ||| ||| Sbjct 170156 ATACCTTCCTTATCTTGAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACC 170215 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || | || || || ||||||||||| Sbjct 170216 TCTAAAGTGATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 >seq1364 Length=85398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||| ||| ||||| |||||||| || ||||| || | Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| |||| ||||| ||||| || || || ||||| || || | || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || |||||| || ||| | | | || || | ||| ||| Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACC 46371 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||||||||||| ||||| | || || ||||| ||||||||| Sbjct 46370 TCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATC 46323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927256115644