Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq59 150 3e-31 >seq59 Length=545433 Score = 150 bits (166), Expect = 3e-31 Identities = 200/275 (73%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| || || | ||||| ||||||||||| || |||||||| || | || || Sbjct 337666 GTACATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTC 337607 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | ||||| || ||| | ||||| | |||||||||| ||| || ||||| || Sbjct 337606 TGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGA 337547 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA-- 48601 || |||||||| || || || || ||| ||||||||||||||||| |||||||| | Sbjct 337546 CGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATG 337487 Query 48602 TTCC---AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 |||| | | ||| |||| ||| || || || || | |||||||| ||||| Sbjct 337486 TTCCCAATGACGAGTA--TCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCC 337429 Query 48659 AGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||||| |||||||| ||||||| |||||||| Sbjct 337428 TCGGCTTTCTTGTACATTTCCCATATCTCCGGATA 337394 Score = 105 bits (116), Expect = 1e-17 Identities = 190/275 (69%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| || || | ||||| ||||||||||| || || ||||| || | ||||| Sbjct 359439 GTACATCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTC 359498 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | ||||| || ||| | ||||| | ||||||||| || || || || || Sbjct 359499 CGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGA 359558 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT--GAGAGCA 48601 || |||||||| || || || || ||| ||| || |||||||||| ||| | | | Sbjct 359559 TGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTGTG 359618 Query 48602 TTCC---AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 |||| | | ||| || | | ||| || || ||||| | ||||| |||||||| Sbjct 359619 TTCCCAGTGACGCGTA--TCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCT 359676 Query 48659 AGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||||| || ||||| |||||| || ||||| Sbjct 359677 TCAGCTTTCTTATACATCTCCCATAACTCTGGATA 359711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931506856811520