Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq59 107 4e-18 >seq59 Length=545433 Score = 107 bits (118), Expect = 4e-18 Identities = 376/576 (65%), Gaps = 26/576 (5%) Strand=Plus/Minus Query 25478 TATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGG 25537 ||||||||||||| ||||| ||| || || ||||| ||||||||| |||||||| Sbjct 359701 TATGGGAGATGTATAAGAAAGCTGAAGCGTCCTTTTGGACGGCCGAAGAGGTTGATCTGT 359642 Query 25538 CCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 || | || | | |||| || | || || | |||||| || || | | Sbjct 359641 CCCATGATACGCGTCACTGGGAACACACCCTTACCGACAACGAGCGTCACTTCATTACTC 359582 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | || |||||||| || || || || || || |||||||||| || ||| Sbjct 359581 ACGTTCTCGCTTTCTTTGCGGCATCCGACGGCATCGTTCTCGAGAATCTGGCCGTTCGAT 359522 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATC 25713 ||| | || || ||| | ||||| || | | ||||| || || ||||| || ||| Sbjct 359521 TCATGAAAGAGGTCCAGGTCTCGGAGG-CACGCGCGTTCTATGGATTTCAGATCGCTATC 359463 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACG---TACATTACAGACGTC 25770 || || | || || ||| |||| || ||||| || | ||||| | |||| | Sbjct 359462 GAGAACATCCATTCAGAGATGTA---CAGTCTTCTATTGGAGTGTTACATCAAAGACAAC 359406 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | |||| | ||| || || ||| | ||| || ||| || | |||| |||||| Sbjct 359405 ACAGAGAAAACTCGTCTCTTCCACGCCGTGGAGACTATTCCCTGCGTGAAGAAAAAGGCG 359346 Query 25831 CGGTGGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| ||| |||||| | | | ||| | |||| ||| || | || || Sbjct 359345 GATTGGGCGATGCGATGGATCGATGGTGCGGAG----TCTTTTGCTGAGAGGATTGTGGC 359290 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG----TTCGTTTGCGGCCATCTTCTGGC 25945 |||||| ||||| || || |||||| || ||| | |||| || ||||||| Sbjct 359289 TTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGCTTC-TGTGCG---ATATTCTGGC 359234 Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 | ||| | | | || | ||||| || ||| ||| |||||||| | || || ||| Sbjct 359233 TGAAG-AAACGCGGTCTGATGCCTGGACTGACCTTCTCCAACGAATTGATATCGAGAGAC 359175 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || || |||||| | || || ||||| |||| ||| Sbjct 359174 GAAGGCCTCCACTGCGACTTCGCCTGTTTGCTTTAC 359139 Score = 98.7 bits (108), Expect = 2e-15 Identities = 376/577 (65%), Gaps = 20/577 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || |||||||| ||||||||||| || | || |||||| ||||| ||| | ||| Sbjct 337400 GAGATATGGGAAATGTACAAGAAAGCCGAGGCGTCTTTCTGGACGGCCGAGGAGGTAGAT 337459 Query 25534 CTGGC-CAAGGACATGGACGGCTGGTAC--GCTCTATCCAAAGACGAGCAGCATTTTCTC 25590 ||| | |||| | | | || || |||| |||| |||||| ||||| | Sbjct 337460 CTGTCTCAAGATACTCGTCATTGGGAACATACTCTCACCAACAACGAGCGCCATTTCATT 337519 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | |||| | || |||||||| || || |||||||| || ||||||||| || Sbjct 337520 ACTCACGTTCTCGCTTTCTTTGCGGCGTCCGATGGTATCGTCCTTGAGAATCTGGCCGTT 337579 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGC 25709 |||||| | || || ||| | || | || ||| |||||||| || ||||| || Sbjct 337580 CGATTCATGAAAGAGGTCCAGGTCTCAGAAG-CACGTGCGTTCTACGGATTTCAGATCGC 337638 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACG---TACATTACAGA 25766 || || || | || || ||| |||| || ||||| || | ||||| | ||| Sbjct 337639 TATTGAGAACATTCATTCCGAGATGTA---CAGTCTTCTCCTGGAGTGTTACATCAAAGA 337695 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 ||| |||| | ||| || ||| ||| | ||| || || | | || | ||| Sbjct 337696 TTCCGCAGAGAAAACTCGTCTATTTCACGCCGTGGAGACTATTCCTTGTGTAAAAAAGAA 337755 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGG 25885 |||| ||||| ||| |||||| || | | ||| | || | ||| || | | Sbjct 337756 GGCGGATTGGGCGATGCGATGGATCGACGGTGCGGAG----TCTTTCGCTGAGAGGATCG 337811 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGG 25944 | ||||||||| ||||| || || |||||| | | |||| | || || |||||| Sbjct 337812 TGGCCTTTGCTTGCGTGGAAGGGATATTTTTC-TCTGGAAGTTTCTGTGCGATATTCTGG 337870 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 | || | | | || | ||||| || || ||| |||||||| | || || || Sbjct 337871 -TTAAAAAAACGTGGTCTGATGCCTGGATTGACCTTCTCCAACGAATTGATATCGAGAGA 337929 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| ||||||||| | ||||| ||||| |||| ||| Sbjct 337930 CGAAGGTCTCCACTGTGATTTCGCCTGTTTGCTTTAC 337966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928818931672320