Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1915 104 2e-17 seq1253 96.9 3e-15 seq486 82.4 6e-11 >seq1915 Length=652484 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| ||||| ||||| || | ||||| ||||| ||| || ||||| Sbjct 300699 ATGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCA 300640 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || || || | ||| || || |||||||| || | || ||| ||| Sbjct 300639 GATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAA 300580 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| |||||||| || || ||| | || ||| | | | | || ||||| ||| Sbjct 300579 CAAAGACTGATCTTTGCAGGTAAGCAACTTGAGGATGATTGCATTCTTGCTGATTACAAC 300520 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||| ||| | || ||||| | |||| ||||||| || Sbjct 300519 ATTCAGAAAGAATCGACTATCCATCTGGTACTCCGATTGAGAGGAGGAAT 300470 >seq1253 Length=111296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || ||||| || ||| Sbjct 79327 GACAAAGAAGGGATACCCCCTGATCAACAGAGACTGATCTTTGCTGGAAAACAGTTAGAA 79386 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| |||| |||| ||||| |||||||| ||||| || ||||| ||| | || || Sbjct 79387 GATGGGCGAACTCTGGCAGATTACAACATTCAGAAAGAGTCCACTCTTCACCTTGTCCTA 79446 Query 28767 AGATTACGAGGAGGGATAATAAT 28789 || | |||| || | ||| || Sbjct 79447 AGGCTCAGAGGTGGCACAATGAT 79469 >seq486 Length=444201 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||||||| ||||||| || ||||| || || ||| |||| Sbjct 170718 ATGCAAATCTTTGTAAAAACACTAACGGGAAAGACCATAACATTAGAGGTAGAATCTTCT 170659 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||||| |||||||| || | || ||| || Sbjct 170658 GATACAATCGATAATGTTAAAACTAAAATTCAGGACAAAGAAGGTATCCCGCCAGACCAG 170599 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | || ||||| ||||| || || |||||| | || ||||||| || ||| Sbjct 170598 CAACGATTGATATTTGCAGGCAAGCAGTTAGAAGATGGTCGTACATTGGCCGACTACAAC 170539 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||||||||| || || || || Sbjct 170538 ATTCAAAAAGAGTCCACCCTACA 170516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425393248664412