Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1805 152 6e-32 seq1716 116 4e-21 >seq1805 Length=698828 Score = 152 bits (168), Expect = 6e-32 Identities = 189/256 (74%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || ||| || | ||||||||| ||||| || ||||| | || ||||||||||| || Sbjct 162214 TAAAAACGGCGCGAGATGTTTCTTAACACCTATCGGACCCATACCTGGACCTCCACCGCC 162155 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCAC 138276 || ||||||||||| || || || | ||| ||||| || ||||| || || ||| | || Sbjct 162154 GTGAGGAATACAGAAGGTTTTGTGAAGATTCAGATGGCAAACATCGGCTCCGATA-TAAC 162096 Query 138277 ATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCAC 138336 || ||| | ||| |||||||| || | ||||| || || | ||| || ||||||| Sbjct 162095 CAGGGCTTGTCAAACCAACCTGTGCGTTCATGTTTGCTCCGTCCATATAGACTTGACCAC 162036 Query 138337 CATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCG 138396 ||||||| |||| |||||| ||||||| ||| | ||| |||| ||||| |||| Sbjct 162035 CATTGTCGTGAATGATCTTGCATATCTCATCGATACCTTCTTCGTATACTCCATGTGTCG 161976 Query 138397 ATGGATATGTAATCAT 138412 | |||||||| | ||| Sbjct 161975 AGGGATATGTTACCAT 161960 Score = 96.9 bits (106), Expect = 4e-15 Identities = 188/276 (68%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305 |||||||| | | || || | | ||| |||||| | || | | ||||||| || | Sbjct 160700 TTGCTATATCTTTGAGACCTCCGGGACCGTGATATACGGCGAACATCGCAGACATGTTCG 160641 Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365 | || | ||| || |||||||| ||||| ||||| |||||| |||||| || || || | Sbjct 160640 CAAGTAATGCCTGAGCTGTGCATATGTTGCTGGTAGCTTTGCCTCTTCGGATGTGTTGTT 160581 Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGAC--C 139423 ||| || || | ||| | | || || || || || ||||| |||||| | Sbjct 160580 CTCGGGTCTGCATTGCCATACGAAGCGCCGGTTTTCCGGCGGAATCCAC--ACTGACTCC 160523 Query 139424 TACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATG 139483 | ||| | || || ||| ||| || || | | || || || | ||| || || || Sbjct 160522 AATAATCCGTCCTGGCATCATTCGTTTGTATTCCTGTGAGGTCGCGAGGAACGCGGCGTG 160463 Query 139484 AGGACCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 ||| || |||||||||||||||| || || ||||| Sbjct 160462 AGGTCCGCCGTATCCCATAGGAACGCCGAATCTTTG 160427 >seq1716 Length=724291 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| ||||||||||| || || | |||||| || ||||| || || Sbjct 373076 TGAGCCGTACAGATGTTGCTGGTTGCTTTATCCCTGCGAATATGTTGTTCTCTTGTCTGC 373017 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGA--CCTACAATTCTGC 139434 | || | | ||| || || || | |||| ||| | || | ||| || | Sbjct 373016 ATAGCCATGCGAAGTGCCGGTTTTCCAGAGGAATCCAT--ACTAATCCCGATAATCCTTC 372959 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || || | |||||||||| | || ||||||| |||||||||||||||||| || | Sbjct 372958 CCGGCATTATCCTCTTATACTCCTGTGAGGTTGCAAGGAATGCAGCATGAGGACCGCCAT 372899 Query 139495 ATCCCATAGGAATACCAAACCTTTG 139519 |||||||||||| |||||||||||| Sbjct 372898 ATCCCATAGGAACACCAAACCTTTG 372874 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 138163 ATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTG 138222 |||||| | |||||| |||||||| || || | ||||||||| ||||||||||| | Sbjct 375097 ATGGTGCCAAGTGTTTTTTGACACCAATGGGTCCCATGCCAGGACCCCCACCTCCATGAG 375038 Query 138223 GAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTT 138282 ||||||| ||||| || || | ||| ||||| || |||||||| ||| | || ||| Sbjct 375037 GAATACAAAATGTTTTGTGAAGATTAAGATGGCAGACATCTGCTCCAATATAACCTGGGC 374978 Query 138283 TTGCTAGACCTACCT 138297 ||| || ||| |||| Sbjct 374977 TTGTTAAACCGACCT 374963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578982274894560