Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq704 111 2e-19 seq1843 104 3e-17 >seq704 Length=333105 Score = 111 bits (122), Expect = 2e-19 Identities = 273/408 (67%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||||| || || ||| | |||||| ||| || || || || || || || Sbjct 213657 TGGTGCCAGCATTCCTAAAGGTGTTCTTCTCATTGGTCCTCCTGGAACAGGGAAAACACT 213716 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAA 175393 ||||| ||| || || |||||| || |||||| || || || | || | | Sbjct 213717 ACTCGCAAAAGCAATTGCCGGTGAAGCAGGTGTCCCTTTTTTCTCAATT-TCAGGATCTG 213775 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | ||||| ||||||||||||||||| || || |||| || ||||| ||| | | | Sbjct 213776 AATTTGTAGAGATGTTTGTTGGTGTTGGAGCTTCTCGGGTCCGTGATCTTTTTAAGAAGG 213835 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | || ||| || || ||||| || |||||||||| ||||| || || | |||| Sbjct 213836 CAAAGGAGAATGCTCCTTGCATTGTGTTTGTTGATGAGATAGATGCTGTTGGTAGGCAAA 213895 Query 175514 GCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | |||| | | | | | ||||| || |||||||||| ||||||| || || Sbjct 213896 GAGGAACTGGAATTGGAGG--GGGCAATGATGAACGAGAACAAACTCTTAATCAGCTTCT 213953 Query 175572 CACCGAGATGGATGGCTTTGACAATGAGACTGG---CATTGTGGTTATTGCGGCCACTAA 175628 || ||||||||||| ||||| | || || |||||||| |||| || || || Sbjct 213954 GACAGAGATGGATGGTTTTGAGGGAAACACAGGGGTCATTGTGG---TTGCTGCTACAAA 214010 Query 175629 TCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 ||| | ||||| || || |||| | || | || || || ||||| Sbjct 214011 TCGTGCAGATATTCTAGACAACGCTTTACTCAGGCCTGGACGCTTTGA 214058 >seq1843 Length=672013 Score = 104 bits (114), Expect = 3e-17 Identities = 254/382 (66%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 175213 GCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGA 175272 || ||| ||| || ||||| | |||||||| | ||| | ||||| | || || Sbjct 455502 GCAAAAATTGAGCTACAAGAGGTAGTGGATTTCTTGAAGAACCCCGACAAGTACACTGCT 455443 Query 175273 AGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACC 175332 || || |||||||| ||| |||||||| || || || || || ||||| Sbjct 455442 TTAGGCGCTAAGATCCCAAAAGGATGCCTTCTCGTCGGACCTCCGGGAACCGGGAAGACA 455383 Query 175333 CTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCA 175392 || || || | || | || || || || || |||||| || ||| |||| || Sbjct 455382 CTGCTGGCAAGGGCTGTGGCCGGGGAGGCAGGAGTACCATTCTTCTCATGCGCTGCTTCA 455323 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 | |||||||| | || |||||||| ||||| || ||||| ||| | ||||| | Sbjct 455322 GAATTTGTGGAATTATTCGTTGGTGTAGGTGCGTCGAGAGTTCGTGATTTGTTTGACAAG 455263 Query 175453 GCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAA 175508 || ||| | ||| || || || || |||||||| || || || || ||||| | Sbjct 455262 GC----GAAGACCAAGGCACCGTGCATCGTGTTCATTGACGAAATAGACGCCGTGGGGAG 455207 Query 175509 GCAACGCAGCGCTGGTGGTATGCC-AGCAAATGACGAGAGAGAACAAACAATTAATCAAC 175567 ||||| | || || | | || || |||||| ||||| || || || || ||||| | Sbjct 455206 ACAACGGGGAGCGGG-GCTTGGCGGAGGAAATGATGAGAGGGAGCAGACGATAAATCAGC 455148 Query 175568 TACTCACCGAGATGGATGGCTT 175589 | || || ||||||||||| || Sbjct 455147 TTCTTACAGAGATGGATGGATT 455126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596552985536640