Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq486 140 6e-28 seq1915 123 4e-23 seq841 87.8 3e-12 >seq486 Length=444201 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||| | | ||| || ||||| | || | |||||| ||| || Sbjct 170482 AATTTGCATACCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTT 170541 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||| || || | | ||| ||||| || || || ||||| || |||| || || Sbjct 170542 GTAGTCGGCCAATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTG 170601 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| || || ||||| ||||| | ||| || ||||| || Sbjct 170602 GTCTGGCGGGATACCTTCTTTGTCCTGAATTTTAGTTTTAACATTATCGATTGTATCAGA 170661 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || |||| ||||| || || || ||||| ||||||||||| |||||||| Sbjct 170662 AGATTCTACCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || || || || | || | |||||| ||| || Sbjct 169343 ATTTGCATTCCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTG 169402 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| || || | | ||| || ||||| ||||| ||||| || || | || || Sbjct 169403 TAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGG 169462 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||| |||||||| || || | |||| ||| || || || || Sbjct 169463 TCTGGTGGGATAGCTTCCTTATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGAC 169522 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||||| ||| || ||||| || || ||||| || || || |||||||| Sbjct 169523 GACTCAACTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| ||||| || ||||| | ||| | || || |||||||| || Sbjct 158754 ATCCCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCA 158695 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || || || || ||||||||||| || ||||| || |||||| Sbjct 158694 GCAAGGGTACGACCATCCTCCAACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGA 158635 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| || || | || | ||| ||| || || || ||||| Sbjct 158634 GGGATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCC 158575 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| ||| || || ||||| || || || ||||| || || ||||| Sbjct 158574 ACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158525 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||||||||| || || ||||| || || ||||| ||||| || || Sbjct 159136 ATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTT 159077 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | ||| ||| || || ||||||||||| || || || || Sbjct 159076 GTCTTGGATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGAT 159017 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || ||||| || || ||||| Sbjct 159016 AGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || || || || |||||||| || ||||| || || ||||| || Sbjct 169205 TGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATC 169264 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| || ||| ||||| || |||||||| || || || || || || ||| Sbjct 169265 TTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTCTTTCCT 169324 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || ||||||||||||||| Sbjct 169325 GTCAAAGTCTTAACAAATATTTGCATT 169351 >seq1915 Length=652484 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||||||| |||||||||||||| | || | ||||| |||||| Sbjct 299551 AATTTGCATTCCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATT 299610 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | | | ||| || | ||| || || ||||| || | ||| || || Sbjct 299611 GTAATCAGAAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTG 299670 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || |||||||| ||||| ||||| | |||| ||| || ||||| || Sbjct 299671 GTCAGGGGGGATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGA 299730 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| | ||| || || || || || | ||| ||||| || ||||||||| Sbjct 299731 AGTTTCTACTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 299788 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||||| ||| ||||||||||| | || | ||||| ||| || Sbjct 300235 AATTTGCATTCCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTT 300294 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | | | | ||| || | |||||| || ||||| || | ||| ||||| Sbjct 300295 GTAATCAGCAAGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTG 300354 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || |||||||| ||||| || || | |||||||| || ||||| || Sbjct 300355 GTCTGGAGGGATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGA 300414 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| | ||| || ||||| || || | || ||||| || ||||||||| Sbjct 300415 AGTTTCTACTTCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCATT 300472 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||||||||| | ||||||||| | || | ||||| ||| || Sbjct 300007 AATTTGCATTCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTT 300066 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | | | | ||| || | |||||| || ||||| || | ||| ||||| Sbjct 300067 GTAATCAGCAAGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTG 300126 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || |||||||| ||| | || || | |||||||| || ||||| || Sbjct 300127 GTCTGGAGGGATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGA 300186 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||||| || || || || || || | ||| ||||| || ||||||||| Sbjct 300187 AGTTTCCACTTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 300244 Score = 116 bits (128), Expect = 7e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||||||||| ||||||||||| | || | ||||| ||| || Sbjct 300463 AATTTGCATTCCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTT 300522 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | | | | ||| || | ||| || || ||||| || | ||| ||||| Sbjct 300523 GTAATCAGCAAGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTG 300582 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || |||||||| ||||| || || | |||| ||| || ||||| || Sbjct 300583 GTCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGA 300642 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||||| | ||| || ||||| |||| | || ||||| ||||||||||| Sbjct 300643 AGTTTTTACTTCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||||||||| | ||||||||| | || | ||||| ||| || Sbjct 299779 AATTTGCATTCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTT 299838 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | | | ||| || | ||| || || ||||| || | ||| || || Sbjct 299839 GTAATCAGAAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTG 299898 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || |||||||| ||||| ||||| | |||||||| || |||| || Sbjct 299899 GTCAGGGGGGATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGA 299958 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||||| ||| || || || || || | || ||||| || ||||||||| Sbjct 299959 AGTTTCTACTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCATT 300016 >seq841 Length=1035533 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| || | || | ||| || |||||||||||| | | || | | Sbjct 649941 CGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCA 650000 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || ||||| || || || | ||| || || || || ||||||||||| Sbjct 650001 TCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTG 650060 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | || || ||||| ||||| || || || || || || Sbjct 650061 TCCTGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATC 650120 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| ||||| ||||| || ||||| || Sbjct 650121 GTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATGTT 650158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899629344624960