Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1915 114 2e-20 seq486 100 4e-16 >seq1915 Length=652484 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || |||||||| | ||||| ||||| || ||||| || ||| Sbjct 300699 ATGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCA 300640 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || | ||| || ||||| ||||||||||| |||||||| ||| Sbjct 300639 GATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAA 300580 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| |||| | ||| |||||||| || || ||| Sbjct 300579 CAAAGACTGATCTTTGCAGGTAAGCAACTTGAGGAT 300544 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || |||||||| || || || ||||| |||||||| ||| ||| Sbjct 300016 AATGCAAATTTTCGTAAAGACATTGACGGGCAAGACAATTACTTTAGAAGTAGAAACTTC 299957 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || | || | |||||| ||||| ||||||||||| || || || || Sbjct 299956 AGATATCGTTGCGAATATAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299897 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT-ACCAGAACTTTATCAGATTATA 156000 |||||| | || | ||| |||||||| || || ||| | || | | | || ||||| | Sbjct 299896 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCA-TATTCTTTCTGATTACA 299838 Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | || ||||| |||| || ||| | || | |||| ||||| || Sbjct 299837 ACATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGG 299789 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||| || || || ||||| || ||||| ||| ||| Sbjct 299788 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATTACTTTGGAAGTAGAAACTTC 299729 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || || | |||||| ||||| ||||||||||| || || || || Sbjct 299728 AGATACGGTTGCGAATGTAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299669 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT-ACCAGAACTTTATCAGATTATA 156000 |||||| | || | ||| |||||||| || || ||| | || | | | || ||||| | Sbjct 299668 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCA-TATTCTTTCTGATTACA 299610 Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 |||| ||||| |||| || ||| | || | | || ||||| || Sbjct 299609 ATATTCAGAAAGAATCGACTCTCCATCTGGTACTTCGGTTGAGAGGAGG 299561 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||| || || || || ||||||||||| ||| ||| Sbjct 300244 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATGACATTAGAAGTGGAAACTTC 300185 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || | || | ||| || | ||| |||||||| || |||||||| || Sbjct 300184 AGATACCGTTGCGAATATAAAGAGTAAGATTCTAGACAAAGAAGGTATCCCTCCAGACCA 300125 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | || | ||| ||||| || || || ||| | | | | | ||||| || Sbjct 300124 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATCGCATTCTTGCTGATTACAA 300065 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| |||| || ||| | || | |||| ||||| || Sbjct 300064 CATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGG 300017 >seq486 Length=444201 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||||||||| || || ||||| || || ||| Sbjct 170262 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAAACCATCACTTTAGAGGTTGAGTCGTCT 170203 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| |||||||| ||||| || || ||||| ||| Sbjct 170202 GACACCATTGATAATGTTAAGGCAAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 170143 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || ||||| | |||||| | | ||||| | || ||||| Sbjct 170142 CAACGCTTGATCTTTGCAGGCAAGCAATTAGAAGATGGCCGGACTTTGGCCGACTATAAC 170083 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||| | ||| | || ||||||| ||| Sbjct 170082 ATTCAGAAAGAGTCCACACTACATCTTGTGCTTAGGCTAAGAGGGGGT 170035 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| || ||||| ||||| || || ||| | || || || || Sbjct 169351 AATGCAAATATTTGTTAAGACTTTGACAGGAAAGACCATCACACTTGAGGTTGAGTCATC 169292 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||||| || || || ||||| || || || || || || || || Sbjct 169291 AGATACCATTGACAACGTAAAGGCAAAGATCCAAGACAAGGAGGGAATCCCACCTGATCA 169232 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||| | ||| || |||||||| |||||| | || | | ||||| || Sbjct 169231 GCAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGGCGGACCCTTGCGGATTACAA 169172 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| ||||| Sbjct 169171 CATTCAGAAAGAATCTACCCTTCACTTAGT 169142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731851617364800