Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1915 114 3e-20 seq486 113 9e-20 seq841 95.1 2e-14 seq1253 89.7 1e-12 >seq1915 Length=652484 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | || | ||| | ||| | || | ||||| || || |||||| Sbjct 299786 ATTCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCA 299845 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | | | ||||| || | ||| ||||| |||||||| | ||| || || ||||| Sbjct 299846 GAAAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGG 299905 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| | |||| ||| | | |||||| | |||| Sbjct 299906 GGGATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCT 299965 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| |||||| || || || || ||||| || | || || |||||| Sbjct 299966 ACTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCATT 300016 >seq486 Length=444201 Score = 113 bits (124), Expect = 9e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 192301 TTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTA 192360 || |||| ||| || | ||||||| |||||| || | |||| ||||| || || Sbjct 169116 TTCATAA-ACCTCCACGGAGACGTAGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTG 169174 Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 ||||| | | || || |||| || | || || ||||||||||| || || || ||| Sbjct 169175 TAATCCGCAAGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGA 169234 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 |||||||| ||||| || || ||||| || || ||||| || || | |||||| Sbjct 169235 TCAGGTGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCAATGGTATCTGAT 169294 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || ||||| || || || || || |||| |||||| |||||| Sbjct 169295 GACTCAACCTCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAACAAATATTTGCATT 169351 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||||||| | | ||| | |||| || | |||||| ||||| || || Sbjct 169577 ATACCCCCTCTAAGCCTAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATATTGTAGTCG 169636 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| ||||| ||||| ||||||||||| || | || || || ||| Sbjct 169637 GCCAAAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGT 169696 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| || ||||| || | || ||| | || Sbjct 169697 GGGATGCCTTCCTTATCTTGGATTTTCGCCTTAACATTGTCGATGGTGTCAGACAACTCA 169756 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| |||||||| || || | ||| || | || |||||||| Sbjct 169757 ACCTCTAAAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAAATCTGCAT 169806 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || | |||| || | |||||| || || || || Sbjct 169349 ATTCCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCG 169408 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| |||||||| || ||||||||||| || | || || || ||| Sbjct 169409 GCCAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGT 169468 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||| |||||||| || || |||||||| || | || ||||| || Sbjct 169469 GGGATAGCTTCCTTATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCA 169528 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| |||||||| || || | || || | || || ||||| Sbjct 169529 ACTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||||| | || || |||| ||||| || || || ||||| || || || Sbjct 158707 GATATTATAATCAGCAAGGGTACGACCATCCTCCAACTGCTTCCCGGCAAAAATCAACCT 158648 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || ||||| || || ||||| || || || ||||| || | Sbjct 158647 CTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGT 158588 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || |||| ||| ||||| |||||||| | || || | || ||||| Sbjct 158587 GTCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTG 158528 Query 192534 CAT 192536 ||| Sbjct 158527 CAT 158525 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | || || |||| ||||| || || ||||||||||| || || Sbjct 158935 GATGTTGTAATCTGCAAGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCT 158876 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || ||||| || || ||||| || || || ||||| || | Sbjct 158875 CTGCTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGT 158816 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || |||| ||| ||||| |||||||| | || || | || ||||| Sbjct 158815 GTCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTG 158756 Query 192534 CAT 192536 ||| Sbjct 158755 CAT 158753 >seq841 Length=1035533 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||| |||| | ||| ||| |||| || | || || || || ||||| || | | Sbjct 649974 ATATTATAGTCAGCAAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGC 650033 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| ||||||||||| || || || || || || ||| || | | Sbjct 650034 TGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTA 650093 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||||| || || || || || || || || |||| ||||| | ||| |||||| Sbjct 650094 TCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGC 650153 Query 192535 ATTTT 192539 || || Sbjct 650154 ATGTT 650158 >seq1253 Length=111296 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | || || | || | ||| | |||||| || || ||||| | Sbjct 79460 CCACCTCTGAGCCTTAGGACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCTGCC 79401 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || || ||||| ||||||||||| | ||||||||||||||| ||| Sbjct 79400 AGAGTTCGCCCATCTTCTAACTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCAGGGGGT 79341 Query 192430 ATTCCTTCTTTATCTTG 192446 || |||||||| || || Sbjct 79340 ATCCCTTCTTTGTCCTG 79324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984451896787800