Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1915 127 4e-24 seq486 98.7 2e-15 >seq1915 Length=652484 Score = 127 bits (140), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | ||| | ||| | ||| | || | ||||| ||| || ||||| Sbjct 299786 ATTCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCA 299845 Query 171900 GATA-AAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | || || | || || || | ||| ||||| ||||| || | ||| || |||||||| Sbjct 299846 GAAAGAATAT-GATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGG 299904 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || |||||||| ||||| |||||| | |||| ||| | | ||||||| | ||| Sbjct 299905 GGGGATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTC 299964 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||||||| |||||| || || || || ||||| || | ||| || |||||| Sbjct 299965 TACTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCATT 300016 >seq486 Length=444201 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | | | || | || ||||| || || || |||||||| || ||| Sbjct 158706 ATATTATAATCAGCAAGGGTACGACCATCCTCCAACTGCTTCCCGGCAAAAATCAACCTC 158647 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || |||||||| || ||||| || || ||||| || || || ||||| || || Sbjct 158646 TGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTG 158587 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || |||| ||| ||||| |||||||| | || || | ||| |||||| Sbjct 158586 TCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGC 158527 Query 172068 AT 172069 || Sbjct 158526 AT 158525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905110791962400