Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq59 143 3e-28 >seq59 Length=545433 Score = 143 bits (158), Expect = 3e-28 Identities = 186/254 (73%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || |||||||||||||| |||||||| || || || || || | |||| | || ||| Sbjct 359449 GAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCGAGACCTGG 359508 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || ||||||| |||||| |||||||||||| || || || Sbjct 359509 ACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATGCCGCAAAG 359568 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 ||||| || ||||| | || ||||| ||||||| |||| | || | |||||| | Sbjct 359569 AAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTGTGTTCCCAGT-G 359627 Query 869810 ACG-GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| || || | || || ||||| ||||| ||||| | || || || || || || Sbjct 359628 ACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTCAGCTTTCTT 359687 Query 869869 GTACATCTCCCATA 869882 ||||||||||||| Sbjct 359688 ATACATCTCCCATA 359701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106956359886276