Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1915 104 2e-17 seq1253 86.0 5e-12 seq486 82.4 6e-11 >seq1915 Length=652484 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || || || || || |||||||| ||||| | ||| || || Sbjct 300472 AATGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTC 300413 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| || | | |||| |||||| ||||||||||| | || || || Sbjct 300412 AGATACCGTTGCGAATATAAAGAGTAAGATTCAAGACAAAGAAGGTATCCCTCCAGACCA 300353 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||| || | ||| |||||||| || ||||||| | | | || |||||||| Sbjct 300352 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGCATTCTTGCTGATTACAA 300293 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| |||||||| || | || |||| | ||||| |||| |||| Sbjct 300292 CATTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGGAA 300243 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||| || || || || || | |||||| ||||| | ||| | || Sbjct 300699 ATGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCA 300640 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| || | | ||||| |||||| |||||||||||| | || || ||| Sbjct 300639 GATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAA 300580 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| || | ||| ||||| || || ||||||| | | | || ||||||||| Sbjct 300579 CAAAGACTGATCTTTGCAGGTAAGCAACTTGAGGATGATTGCATTCTTGCTGATTACAAC 300520 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| |||||||| || | || |||| | || || |||| |||| Sbjct 300519 ATTCAGAAAGAATCGACTATCCATCTGGTACTCCGATTGAGAGGAGGAA 300471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || || || || || ||||| || || || | ||| ||| || Sbjct 300244 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATGACATTAGAAGTGGAAACTTC 300185 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| || | | |||| |||||| ||||||||||| | || || || Sbjct 300184 AGATACCGTTGCGAATATAAAGAGTAAGATTCTAGACAAAGAAGGTATCCCTCCAGACCA 300125 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||| || | ||| |||||||| || ||||||| | | | || |||||||| Sbjct 300124 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATCGCATTCTTGCTGATTACAA 300065 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| |||||||| || | || |||| | || || |||| |||| Sbjct 300064 CATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGGAA 300015 >seq1253 Length=111296 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | ||| |||||||| ||||| || | ||| || |||||| | || Sbjct 79327 GACAAAGAAGGGATACCCCCTGATCAACAGAGACTGATCTTTGCTGGAAAACAGTTAGAA 79386 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||| |||| |||||||||||||| ||||| || || | ||| | || || Sbjct 79387 GATGGGCGAACTCTGGCAGATTACAACATTCAGAAAGAGTCCACTCTTCACCTTGTCCTA 79446 Query 110486 AGACTGCGAGGGGGAAAAA--ATAAA 110509 || || |||| || | || ||||| Sbjct 79447 AGGCTCAGAGGTGGCACAATGATAAA 79472 >seq486 Length=444201 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || ||||| || || || ||||| || | || ||| | Sbjct 169351 AATGCAAATATTTGTTAAGACTTTGACAGGAAAGACCATCACACTTGAGGTTGAGTCATC 169292 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | ||||| ||||| ||||| || || | || ||||| Sbjct 169291 AGATACCATTGACAACGTAAAGGCAAAGATCCAAGACAAGGAGGGAATCCCACCTGATCA 169232 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | || | ||| || || ||||| || |||| | || | ||||||||||| Sbjct 169231 GCAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGGCGGACCCTTGCGGATTACAA 169172 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| ||||||||||| Sbjct 169171 CATTCAGAAAGAATCTAC 169154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412830389802404