Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq59 138 2e-26 >seq59 Length=545433 Score = 138 bits (152), Expect = 2e-26 Identities = 215/308 (70%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 |||||||||||| ||| || || ||||| || ||||| ||||| ||||| || || Sbjct 359185 ATCAATTCGTTGGAGAAGGTCAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATC 359244 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475 |||||||| || || |||||||| || || || ||| ||||| | || | || ||| Sbjct 359245 GCACAGAAGCTTCCAGAGAAAAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCA 359304 Query 794476 GCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTC 794535 ||||||| ||| || || |||||| ||||||||| || ||||||||| || Sbjct 359305 GCAAAAGACTCCGCACCATC------GATCCATCGCATCGCCCAATCCGCCTTTTTCTTC 359358 Query 794536 ACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACG 794595 || |||| | || || | |||| | ||||| | ||||| ||| |||| | Sbjct 359359 ACGCAGGGAATAGTCTCCACGGCGTGGAAGAGACGAGTTTTCTCTGTGTTGTCTTTGATG 359418 Query 794596 TAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAG 794655 || || | || || ||| ||||||| |||||||| ||||| |||||||| || Sbjct 359419 TAACACTCCAATAGAAGACTGTACATCTCTGAATGGATGTTCTCGATAGCGATCTGAAAT 359478 Query 794656 CCATAAAA 794663 ||||| || Sbjct 359479 CCATAGAA 359486 Score = 131 bits (144), Expect = 3e-24 Identities = 154/208 (74%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || |||||||| |||||||| || ||||||| ||||| ||||||||| Sbjct 359494 GCCTCCGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCG 359553 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| || || || || ||||| ||||| | || ||||||||||||| |||| | || Sbjct 359554 TCGGATGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGG 359613 Query 796270 GAG---ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||||| ||| || | || || ||||| ||||| ||||||||||| Sbjct 359614 GTGTGTTCCCAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGAC 359673 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATA 796354 || || || || || ||||||||||||| Sbjct 359674 GCTTCAGCTTTCTTATACATCTCCCATA 359701 Score = 104 bits (114), Expect = 4e-16 Identities = 218/324 (67%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| | |||||||||||| ||| | || ||||| || || || || Sbjct 337936 ACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAATCCAGGCATCAGACCACGTTT 337877 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || | ||| || || ||||||||||| || |||||||| || || || ||| ||||| Sbjct 337876 TTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAATATCCCTTCCACGCAAGCAAA 337817 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | |||| || ||| || |||| ||| || | || |||||| ||||||||| Sbjct 337816 GGCCACGATCCTCTCAGCGAAAGACTCC--GCAC----CGTCGATCCATCGCATCGCCCA 337763 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| || | || | || | || || | |||| |||| || | ||||| Sbjct 337762 ATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAATAGACGAGTTTTCTC 337703 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | || |||| ||| || | ||| || ||| |||| || || ||||| || Sbjct 337702 TGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACATCTCGGAATGAATGTTCTC 337643 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 || |||||||| || || || || Sbjct 337642 AATAGCGATCTGAAATCCGTAGAA 337619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916009397478092